Query= MSMg01no088_l09.b1 MSMg01no088_l09.b1 CHROMAT_FILE:
MSMg01no088_l09.b1 PHD_FILE: MSMg01no088_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:17 2005
(179 letters)
>mm_chr11_47681265_47681843
Length = 579
Score = 317 bits (164), Expect = 2e-91
Identities = 175/179 (97%)
Strand = Plus / Plus
Query: 1 ttcctgagnatttaatgttagcagttatttccatgaggaaaagaaatgtatgtccttgtg 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttcctgagtatttaatgttagcagttatttccatgagggaaagaaatgtatgtccttgtg 260
Query: 61 gctataatttgttggattctcaaagctagtaagttattcatggtttcagcatcatcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gctataatttgttggattctcaaagctagtaagttattcatggtttcagcatcatcaaat 320
Query: 121 gttcatgtgcatggcaatcacctggggaaccttattcaattaatacagaacaaagatac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcatgtgcatggcaatcacctggggaaccttattcaattaatacagaacaaagatac 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no088_l09.g1 MSMg01no088_l09.g1 CHROMAT_FILE:
MSMg01no088_l09.g1 PHD_FILE: MSMg01no088_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:17 2005
(507 letters)
>mm_chr11_47805133_47806040
Length = 908
Score = 951 bits (492), Expect = 0.0
Identities = 504/508 (99%), Gaps = 1/508 (0%)
Strand = Plus / Minus
Query: 1 tttt-aaatgaagaccctgtgttttgggaatgtggctgaattggtacgttgttatataat 59
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 708 ttttaaaatgaagaccctgtgttttgggaatgtggctgaattggtaggttgttatataat 649
Query: 60 cacagtgtggtagcacatatctacagtccaagcacttagaagatgggcaaaggaaagtca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cacagtgtggtagcacatatctacagtccaagcacttagaagatgggcaaaggaaagtca 589
Query: 120 gaaattcaagcttagcgtgggttacttgaaacctaaaaagtatgtgaaatataactaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaaattcaagcttagcgtgggttacttgaaacctaaaaagtatgtgaaatataactaaaa 529
Query: 180 actgagggcctgggctacagactatttccaacctctctatgtgaatatctatgagcctgt 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 528 actgagggcctgggctacagactatttccaacgtctctatgtgaatatctatgagcctgt 469
Query: 240 cactcacttttaagtcacacttttatggatattgaataaatcatcatattcttcactata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cactcacttttaagtcacacttttatggatattgaataaatcatcatattcttcactata 409
Query: 300 aagttctatgggctagttaatgataagaaatctcccatggtatatgtcccatggcagggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aagttctatgggctagttaatgataagaaatctcccatggtatatgtcccatggcagggg 349
Query: 360 aaacactgctttcaaaagaaaccattttgatttcaggaaagataactttccagggatcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaacactgctttcaaaagaaaccattttgatttcaggaaagataactttccagggatcac 289
Query: 420 tacaatcagagggaaattgcctcatgtcctatagttagatattattctttcctccctggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tacaatcagagggaaattgcctcatgtcctatagttagatattattctttcctccctggg 229
Query: 480 tcagcagccttgtcccagaatgatggag 507
|||||||||||||||||| |||||||||
Sbjct: 228 tcagcagccttgtcccaggatgatggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
