BAC Information

Click to search

BAC

Clone NameMSMg01-088N15
Chromosome11 (Build37)
Map Location 39,754,463 - 39,754,930
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N15.T7 (MSMg01no088_n15.b1)MSMg01-088N15.TJ (MSMg01no088_n15.g1)
ACCAG307500AG307501
length678687
length of high quality
(start - end)
466 (102 - 567)564 (56 - 619)
definitionCHROMAT_FILE: MSMg01no088_n15.b1 PHD_FILE: MSMg01no088_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005CHROMAT_FILE: MSMg01no088_n15.g1 PHD_FILE: MSMg01no088_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTACCTATCGGGAGAGGATCCGCGGAATTCTCTGATCCACTTTCATTT
TCCACAAGGTAATCAAGATTCATAAAACTCCACTTTAGGATCATGGCACC
AGGGAGTCAATGTCCTTGAGGGGAACACAATCTTCTAATGAGAATTGCAT
TTCAATGGGGTTAATCTCACAGGATCTGATAAATGGACACAGTGGAATTG
AATCTTATTTTATTTGGCTTCATTGTCCTTTCTGCCACACATTCCATTCA
ATACCAAGGTAATGGAATATTTAAAATGTGCATTGTTTGCTTCTGTTACA
GAAGCAATAGTAGAGTCCTCAGTCTAAGAAACAGGAGAACAGGTTGACGG
TGGAGAACAGGTTGATAGCACACTATCTTCTATGATTATCAGTGTCTTCA
AAATCATGCTAACTTCTTAAGTCTTTCCTGCATTGCTCCAAATCAAATTA
ACCCTCTGTTTTGCAGTTTCCCATCCCAATCCTTTTCTGTTCCCATTCTT
CCCTCTGTCTACATTCTGTTAGCTTCAATAACCATCTACACAGCAACCTA
TTAAGAAGGTCTTTCAGAGACAGAGAGACTGGGGACTGAATAGTATGGTA
ACATGTGTTTTAAAACTGCTATTTTTAAAACATGTCATCTTACCTGTCTT
GATGTAATTCATACCAAACCTATAGTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGAACATATCAAAATGATCATCCATCATGATCAAGTATGCTTCA
CCCCAGGGATGGAGGGATGGTTTAATACATCAACATACTCCACTATATAA
ACAAACTCAAAGACAAAAACCACATGATCATCTCGCTAGATGCTGAGAAA
GCATTTGACAAAATCCAACACCCATTCACAATAAAGGTTTTGGAAAGATC
AGAAATTCAAGTCCCATACCTAAACATAATAAAAGCAATATAAAACAAAC
CAGTAGCCAACATCAAACTAAATGGAGAGAAACTGGAAGCAATCCCACTA
AAATCAGGGACTAGAGAAGGCTGCCTTCTTTCTCACTACCTATTCAATAT
AGTACTCGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGGTCAAGG
GGATACATATTGGAAAGGAAAAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAATAAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCTAACA
AATCAGTGGCCTTTCTCCACACAAAGGATAAACAGGCTGATAAAGAAATT
AGGGAAACAACACCCTTCACAAATAATACTAAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n15.b1 MSMg01no088_n15.b1 CHROMAT_FILE:
MSMg01no088_n15.b1 PHD_FILE: MSMg01no088_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:28 2005
         (466 letters)



>mm_chr11_39754263_39755130
          Length = 868

 Score =  870 bits (450), Expect = 0.0
 Identities = 463/468 (98%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagtcaatgtccttgaggggaacacaatcttctaatgagaattgcatttcaatggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gggagtcaatgtccttgaggggaacacaatcttctaatgagaattgcatttcaatggggt 609

                                                                       
Query: 61  taatctcacaggatctgataaatggacacagtggaattgaatcttattttatttggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taatctcacaggatctgataaatggacacagtggaattgaatcttattttatttggcttc 549

                                                                       
Query: 121 attgtcctttctgccacacattccattcaataccaaggtaatggaatatttaaaatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attgtcctttctgccacacattccattcaataccaaggtaatggaatatttaaaatgtgc 489

                                                                       
Query: 181 attgtttgcttctgttacagaagcaatagtagagtcctcagtctaagaaacaggagaaca 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attgtttgcttctgggacagaagcaatagtagagtcctcagtctaagaaacaggagaaca 429

                                                                       
Query: 241 ggttgacggtggagaacaggttgatagcacactatcttctatgattatcagtgtcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggttgacggtggagaacaggttgatagcacactatcttctatgattatcagtgtcttcaa 369

                                                                       
Query: 301 aatcatgctaacttcttaagtctttcctgcattgctccaaatcaaattaaccctctgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatcatgctaacttcttaagtctttcctgcattgctccaaatcaaattaaccctctgttt 309

                                                                       
Query: 361 tgcagtttcccatcccaatccttt--tctgttcccattcttccctctgtctacattctgt 418
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 308 tgcagtttcccatcccaatccttttctctgttcccattcttccctctgtctacattctgt 249

                                                           
Query: 419 tagcttcaataaccatctacacagcaacctattaagaaggtctttcag 466
           |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagcctcaataaccatctacacagcaacctattaagaaggtctttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space:   391248
Effective search space used:   391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)