BAC Information

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BAC

Clone NameMSMg01-088N21
Chromosome11 (Build37)
Map Location 32,006,057 - 32,006,400
singlet/doubletsinglet
Overlap geneLOC669207
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2
Downstream geneIl9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N21.T7 (MSMg01no088_n21.b1)MSMg01-088N21.TJ (MSMg01no088_n21.g1)
ACCAG307512AG307513
length692694
length of high quality
(start - end)
287 (42 - 328)346 (55 - 400)
definitionCHROMAT_FILE: MSMg01no088_n21.b1 PHD_FILE: MSMg01no088_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:29 2005CHROMAT_FILE: MSMg01no088_n21.g1 PHD_FILE: MSMg01no088_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATATCGAGAGATCCGCGGATTCTCTATTACTCTCATCAGTCTTTTTG
GGGAGGCGGGCTACTGGTCAGTTTTTTTAGTTCTGTGTACCTCTACTTAT
TATTCTCTAAGACACATAGCTCTGATTTCCTCTAGTCTGTGGGCTTTCTC
TTCACCCAACTGTTCCCTTTGTTACACAGAAGATTTTTTTTTATTTCATG
AGATCCCATTTGTCAATTGTTGGCCTTATTTCCTTGGCAACTGGGGTCCT
ATTCAGAACTTGCCAATACTTTTTCCAGTATTCAGATCTTACATTAAGGT
CCCCCTAACCCCCATCACCAATTTAGAGTTGTTTTTTGTTTGAGGTAAGA
AATGGGGAGTTTTAACTTTATTTTATCCCTTATCGCCATTATATAAAATA
TTCTCAGCCCCATTTCTCTCCTTATTTTCACTTCATTCTCCATCTTTTTT
TTACATCCCAACATACACACATCTTCTAACATATCATATTCCTTTCTATC
CTATTTTTCTATCACATTTTTTTTACAATCCATCATTTATACCTAAATTA
TTTTACTCATTTTTTCCACCTCATTCATTGTTTTAATTACTATATATCTC
TTTACCTATTTAAATATTCTCCTTCCTCATTTCATTTTTCTTCTTATTTT
TCTCTTCCTATTATTATACTTTAAAATAAAATTTGTTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGTGCCCAAGGCCTCATGCTAATGCTTTAGTGAAGCAGGTGTTCGC
CCCTTCACTCACTGCTGTTCTGAGACGGCATCTGGGCAGAACTTCCAGTT
GAGAGGACAGAACAAGACAAGCCTGTGCCCCACTCACAGGCAAGGGCGGC
AAAGAGTCTCCATTCTCAGGGGAGAGCAGTGACCCGATGGGTTTTACTCC
ACAATTTAAAAATTCCATAAACCATGGCAAACAGCATAATTATGGTGTTA
CTGATGTTCCTGCCGTTTACTTGTGTGAAATGCTGACAGGTTTTATCTTT
TGAATCTCCCTGCAATCTATTACTTAGGTCTGGCCTCATTGCCTGTTGCA
AAGAGCAGGAACCTTGATGCTAAGGCTGCCAGAAAAAATTAACATTCTAC
AATAAACCAAAAATACCCCCAAAAATATAAACAGGCTTCAGCAGGTTGGC
ATACTATGTCTGGGGCTTTCCCTTGTTATGTTCAAGAACAGTGAATTGAG
AGCACAGCCTACAGGAGGGGACCAGGGAGGGTCCCAGCCCATTCGTGACT
ATGGCCCTAGACCCTGTCTCCAAATGCTTGCCCTGTGTCACCAGTTTGAT
TTTGGCAACCTCCATTTCTAAACCGAGCCATGTCCAAGCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n21.g1 MSMg01no088_n21.g1 CHROMAT_FILE:
MSMg01no088_n21.g1 PHD_FILE: MSMg01no088_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:29 2005
         (346 letters)



>mm_chr11_32005857_32006602
          Length = 746

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcccaaggcctcatgctaatgctttagtgaagcaggtgttcgccccttcactcactg 60
           ||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||
Sbjct: 544 agtgcccaaggcctcatgctaatgctttagtgaagcaggtggtcgtttcttcactcactg 485

                                                                       
Query: 61  ctgttctgagacggcatctgggcagaacttccagttgagaggacagaacaagacaagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgttctgagacggcatctgggcagaacttccagttgagaggacagaacaagacaagcct 425

                                                                       
Query: 121 gtgccccactcacaggcaagggcggcaaagagtctccattctcaggggagagcagtgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtgccccactcacaggcaagggcggcaaagagtctccattctcaggggagagcagtgacc 365

                                                                       
Query: 181 cgatgggttttactccacaatttaaaaattccataaaccatggcaaacagcataattatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cgatgggttttactccacaatttaaaaattccataaaccatggcaaacagcataattatg 305

                                                                       
Query: 241 gtgttactgatgttcctgccgtttacttgtgtgaaatgctgacaggttttatcttttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtgttactgatgttcctgccgtttacttgtgtgaaatgctgacaggttttatcttttgaa 245

                                                       
Query: 301 tctccctgcaatctattacttaggtctggcctcattgcctgttg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctccctgcaatctattacttaggtctggcctcattgcctgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)