Query= MSMg01no088_n23.b1 MSMg01no088_n23.b1 CHROMAT_FILE:
MSMg01no088_n23.b1 PHD_FILE: MSMg01no088_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:29 2005
(473 letters)
>mm_chr11_25720769_25721641
Length = 873
Score = 907 bits (469), Expect = 0.0
Identities = 472/473 (99%)
Strand = Plus / Minus
Query: 1 actctccagactgtttatacagctggaaaatagctatggtaacagatgagggggaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actctccagactgtttatacagctggaaaatagctatggtaacagatgagggggaaaagt 614
Query: 61 taataaggaactccctttaaaaattcagttatctctctgtgtgtttttaaatgtcccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taataaggaactccctttaaaaattcagttatctctctgtgtgtttttaaatgtcccctg 554
Query: 121 agcccttattgggtagcttaaactaaatttttcatggtcgccatattaaatgagctagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agcccttattgggtagcttaaactaaatttttcatggtcgccatattaaatgagctagta 494
Query: 181 ataaactcactggatgttttaatattttaaatgctgtcttgaatttgaatgcacatttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ataaactcactggatgttttaatattttaaatgctgtcttgaatttgaatgcacatttca 434
Query: 241 aatggcaaaggaggcagcttaatgcctttttaatccactgctcaccatttgctgaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatggcaaaggaggcagcttaatgcctttttaatccactgctcaccatttgctgaagaaa 374
Query: 301 ggcatgttggttttccattaaggaatccaagcttgtcatccacaaatttctccttcacca 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 ggcatgttggttttccattaaggaatccaagcttttcatccacaaatttctccttcacca 314
Query: 361 gaactgctcttagtgttttctggaattttttacataatcaattcatatccaggcagggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaactgctcttagtgttttctggaattttttacataatcaattcatatccaggcagggtg 254
Query: 421 tattgcttccataatggtttcagctgacacattacaaaaactgcctatgaggc 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tattgcttccataatggtttcagctgacacattacaaaaactgcctatgaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_n23.g1 MSMg01no088_n23.g1 CHROMAT_FILE:
MSMg01no088_n23.g1 PHD_FILE: MSMg01no088_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:29 2005
(572 letters)
>mm_chr11_25596407_25597378
Length = 972
Score = 1044 bits (540), Expect = 0.0
Identities = 565/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Plus
Query: 1 ccactcttaaaaataattgttttatttttaattgcagtctgataatacaaagtttaatct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ccactcttaaaaataattgttttatttttaattgcagtctgataatataaagtttaatct 260
Query: 61 acagtggttacttatctcatagtctgtggaagtataaaaaagaggtgccaatcagagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtggttacttatctcatagtctgtggaagtataaaaaagaggtgccaatcagagtcc 320
Query: 121 aaagaacaaacttgctgaaaagtatcacattttcagcctaggtttgactgaaataagaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaacaaacttgctgaaaagtatcacattttcagcctaggtttgactgaaataagaat 380
Query: 181 ttggcttggagaatgctttgtattatgcagagactctgagtgagatgtttttcaggccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggcttggagaatgctttgtattatgcagagactctgagtgagatgtttttcaggccat 440
Query: 241 tattcatgttttagcatactaataacatcaactttataagcattgttttctacctctaag 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tattcatgttttagcatactaataacatggactttataagcattgttttctacctctaag 500
Query: 301 cagcaccagaaggatcccccaaaccataagcaaaacactttataaaacgagtaatgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaccagaaggatcccccaaaccataagcaaaacactttataaaacgagtaatgtagt 560
Query: 361 ctggccacaaaaatattcaatgagagtcaatgagaaattgaacttatatgtgctttaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggccacaaaaatattcaatgagagtcaatgagaaattgaacttatatgtgctttaagc 620
Query: 421 tcagtaacaattcttagtgcatgtgttctatgacagttagagggtagtgtaaccctagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtaacaattcttagtgcatgtgttctatgacagttagagggtagtgtaaccctagtt 680
Query: 481 atgtggatgtggcttgcattgttattattattattaggagtagtgttttatttctttttt 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 atgtggatgtggcttgcattgttattattattattagtagtagtgttttatttctttttt 740
Query: 541 ttt--aagttaaaaaatttttttaagagctagga 572
||| ||||||||||| ||||||||||||||||
Sbjct: 741 tttttaagttaaaaaaaatttttaagagctagga 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
