BAC Information

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BAC

Clone NameMSMg01-088O17
Chromosome11 (Build37)
Map Location 59,623,765 - 59,623,994
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn
Downstream geneCops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088O17.T7 (MSMg01no088_o17.b1)MSMg01-088O17.TJ (MSMg01no088_o17.g1)
ACCAG307552AG307553
length725664
length of high quality
(start - end)
194 (120 - 313)230 (106 - 335)
definitionCHROMAT_FILE: MSMg01no088_o17.b1 PHD_FILE: MSMg01no088_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:33 2005CHROMAT_FILE: MSMg01no088_o17.g1 PHD_FILE: MSMg01no088_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCACAGCGACTTGGAGCTGCAGACTGAATTCAAGGCTACCTTGGGCTACA
GTATTAGACCCTTTCTCAAAAAAGGCAAAAAGAGTCTGAGGACACAGCTC
ATTTGGCAGAGTGCTTGCCCCAGCATGGCTGAAGTCCTGGGCTCCATCTC
TAGTACTAGTGATCAAAATTGCATGATGATAGATACCTATGACCCAGTGT
TCATGAGGCAAGAAAATCAGGAGCTTGGGGGCGATTGACAGGGGGTGTAG
GGGCTGGGGTGGGTTGTTGACNTAACCCCCCTTTCCTCTCCCTGATCCAT
TTTTTTTTTCCCCCCCCCCCCCCCTTTCCCCTTCACTCTTATTCACTATC
TTTTTTTTTTTCCCCCCTTTTTTAAAAAATTTTTACCCCTTCGCCTTGAT
ACTTTTCCCCCCTCCCACCAATCCTATTTCCCTCTCTTTTTTCATCACCT
TTCCCCCCCTTTCCTTATACTTCACTCCTCCCCCATCATTTAACTCCCTT
TATATTACCTTCCCCCTTTCTCCCTCTTTCTTTTTTATCCCCTCTCTATT
TTACTTTTCTTTTCTCACTCTCTATACTAATCCAATTTCCCAATCACATC
CCCATATATATTCATTCTTGCTTTTCCTTTTCTTTCCCTTTCCCATCAGT
ACCCCTTTTATCACCATTCCCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGAAATCCATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAACC
CCGTGCGCCACCACTGACCGGCTTAAAATTAATTTTTAAGTAGCTAAATA
ATATTCCATCCCTCATCCCCAAACGGGAAATCAAACCCAGGGCTTAGAGA
AAACAACCCCACAATCCACGAACTGTTTTGAAAGCTAGTTTGCAAAGATA
GGGCCGGCTTAGGGCAAGACTGAGCCGTGCACATGCGTGGTCCTGCTTCG
CTCTGTACCCTCCTCCCTCCCAGGACCTGTCCGTACCTTCTACTTCTCTC
GAAGGGGAGACGGTTTCTCTGATCTGCAACTTTACAGGCAGGCACCGCAG
TCCCAAGAACTCCCAGAATCCAGAGGAAATTTTCCGCAAATCTTTCCTCT
TCGGTAGGGACAGAGCATGGACTGACTAATTCTCTCTGACTTTTTTGAAA
TGTCAGTTTTGACGCCACCCCTGCAGAATGTCTTCTCTCGCCGGCCGGAA
CCATCTACGCTTTTCCGCGTTACGACTTGCCGCGCCGAGGGTCGCGCGCG
GCCGAGGTCATTGGATTCCTTGCCTGTAGGATTATTACGTGATACATTAA
GGTTCTCCACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_o17.g1 MSMg01no088_o17.g1 CHROMAT_FILE:
MSMg01no088_o17.g1 PHD_FILE: MSMg01no088_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:33 2005
         (230 letters)



>mm_chr11_59623565_59624194
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgccaccactgaccggcttaaaattaatttttaagtagctaaataatattccatccctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cgccaccactgaccggcttaaaattaatttttaagtagctaaataatattccatccctca 371

                                                                       
Query: 61  tccccaaacgggaaatcaaacccagggcttagagaaaacaaccccacaatccacgaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccccaaacgggaaatcaaacccagggcttagagaaaacaaccccacaatccacgaactg 311

                                                                       
Query: 121 ttttgaaagctagtttgcaaagatagggccggcttagggcaagactgagccgtgcacatg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 ttttgaaagctagtttgcaaagatagggccggctcagggcaagactgagccgtgcacatg 251

                                                             
Query: 181 cgtggtcctgcttcgctctgtaccctcctccctcccaggacctgtccgta 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cgtggtcctgcttcgctctgtaccctcctccctcccaggacctgtccgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)