BAC Information

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BAC

Clone NameMSMg01-088P08
Chromosome11 (Build37)
Map Location 104,731,385 - 104,731,730
singlet/doubletsinglet
Overlap geneLOC632784
Upstream geneNsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749
Downstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088P08.T7 (MSMg01no088_p08.b1)MSMg01-088P08.TJ (MSMg01no088_p08.g1)
ACCAG307581AG307582
length705693
length of high quality
(start - end)
356 (46 - 401)122 (61 - 182)
definitionCHROMAT_FILE: MSMg01no088_p08.b1 PHD_FILE: MSMg01no088_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:36 2005CHROMAT_FILE: MSMg01no088_p08.g1 PHD_FILE: MSMg01no088_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGAACACCAAGAGGAGGCACTATGGGATGTCCTCCCTATCCAT
GGTGAGTTAAGCAAATGCCTTATTGAAGGGACTGGATTCCCAGGGGTCGT
GGATAGTTTCCTGAACTTATCTCTTCTACTGGTTCTTCTACAAAGTGCTG
AAAATGAATATAAAAAAAAAAACAAACCACATTCCCTGCTGTAGAATTTT
AATCTAAGACTCACCAAGCTCTTCAATAATTCTGCCATCAGAGTTGATGT
AATTGGGGCAGCATGGTTCACACATGCTACTGAGCCCTAAGTGCATGAGG
GGAAAAAAGAAAAACTGAGGAGAATAAGTTGTGTTAAGGTTCTGTTAAGG
AGAGAAGGGTGAGGGAGAGAAAACAGAAGGAAATGGAGATAGTTTCTAAG
TAGCTCTCTCCACATACATATTTTTGTCACTAAGAAAATATACCTTTTAA
AAACCATTTTATTTCATATGATGTTAGGCAAGATCTCTCTAATATTACTT
TACACATCTCACTTACTGAAACTAGCCACTTGCCCAACACCTGGGTAACT
TCCTTTTTCTTGCGGGATAAATTGCACTCTTTTCTTGCACAACTTGCAAT
GCTTGTATGATACACAATGTTGGAACATTTGATGGCGATGAAAGGTTTGT
TACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGAAGTCTGCTTGAAAAATGACCTGAAACTCCAGTGAGGATTC
ATAGGACCTCAATTCAAAACTTGGCTGAAAAGCTCTGTAAGGACAGTGAA
ACACACACACACACACACACACACACATACTCACACATATAGAGACAGAC
AGAGAGAGAGACAGAGACAGAGATAGACAGTGACACAGAGAGAGACACTC
ACAGACAGACACAGACAGACACATAATCACAGACACAGAGAAAGACAGGC
AGACCGATTGACAGACAGACACACATACATACACTCTTCTTCACACAGAG
AGATAAAGACAGATATAGAGAGAGAGAGAAAGCGACTTATAGAGAGACAC
ACACAGAGAGACACACATACACATAACCACTCCGAGACTGACAAGCATAC
CAACAGACTGACTTATAGATTCACATCCACACTCAGACAGTGACTCACAG
AGAGATAGACACTTACAGAGACTCACTCAGACATATATTCCCATACCCCG
AGACTGGCCGTCTGGCTGACTGAATGTACTACTCACAGACCGACCCCTTT
TCTCACACTCTCTTCCCTATATACTTATTCTCTCCTTGTCCTCCCCATAT
CCCCCATCTTTACAGAATCCCTTGAAACCACTTTGCTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_p08.b1 MSMg01no088_p08.b1 CHROMAT_FILE:
MSMg01no088_p08.b1 PHD_FILE: MSMg01no088_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:36 2005
         (356 letters)



>mm_chr11_104731181_104731930
          Length = 750

 Score =  615 bits (318), Expect = e-180
 Identities = 341/352 (96%), Gaps = 6/352 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaacaccaagaggaggcactatgggatgtcctccctatccatggtgagtta 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaacaagaagaggaggcactatgggatgtcctccctatccatggtgagtta 264

                                                                       
Query: 65  agcaaatgccttattgaagggactggattcccaggggtcgtggatagtttcctgaactta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaaatgccttattgaagggactggattcccaggggtcgtggatagtttcctgaactta 324

                                                                       
Query: 125 tctcttctactggttcttctacaaagtgctgaaaatgaatataaaaaaaaaaacaaacca 184
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||      ||
Sbjct: 325 tctcttctactgattcttctacaaagtgctgaaaatgaatagaaaaaaaaaa------ca 378

                                                                       
Query: 185 cattccctgctgtagaattttaatctaagactcaccaagctcttcaataattctgccatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattccctgctgtagaattttaatctaagactcaccaagctcttcaataattctgccatc 438

                                                                       
Query: 245 agagttgatgtaattggggcagcatggttcacacatgctactgagccctaagtgcatgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agagttgatgtaattggggcagcatggttcacacatgctactgagccctaagtgcatgag 498

                                                               
Query: 305 gggaaaaaagaaaaactgaggagaataagttgtgttaaggttctgttaagga 356
           |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gggaaaaaaggaaaactgaggagaataagttgtgttaaggttctgttaagga 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 750
Length adjustment: 9
Effective length of query: 347
Effective length of database: 741
Effective search space:   257127
Effective search space used:   257127
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)