Query= MSMg01no089_f23.b1 MSMg01no089_f23.b1 CHROMAT_FILE:
MSMg01no089_f23.b1 PHD_FILE: MSMg01no089_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:09 2005
(233 letters)
>mm_chr11_116103618_116104251
Length = 634
Score = 408 bits (211), Expect = e-118
Identities = 228/237 (96%), Gaps = 7/237 (2%)
Strand = Plus / Minus
Query: 1 atattggaagctgcctgcatcctgacagcaccagttgcccc----ctaacctgctgttcc 56
||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 434 atattggaagctgcctgcatcctgacagcaccagttg---caagtctaacctgctgttcc 378
Query: 57 tttagcattagacatacttgcgtgatggctgccagaggtctgcagagcctgggaaaagct 116
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttagcattagacacacttgcgtgatggctgccagaggtctgcagagcctgggaaaagct 318
Query: 117 atggtcagggacacttcggggcaaggcagaaaccctctggatgcctgtctgccttcctct 176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 317 atggtcagggacacttcggggcaaggcagaaaccctctggatgcctgtctgacttcctct 258
Query: 177 ctgcatcatcctctgcgcaggaaaggctctacaaatgtctacagagagattgttagt 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgcatcatcctctgcgcaggaaaggctctacaaatgtctacagagagattgttagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 634
Length adjustment: 9
Effective length of query: 224
Effective length of database: 625
Effective search space: 140000
Effective search space used: 140000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_f23.g1 MSMg01no089_f23.g1 CHROMAT_FILE:
MSMg01no089_f23.g1 PHD_FILE: MSMg01no089_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:09 2005
(381 letters)
>mm_chr11_115960233_115961013
Length = 781
Score = 687 bits (355), Expect = 0.0
Identities = 371/381 (97%), Gaps = 8/381 (2%)
Strand = Plus / Plus
Query: 1 gcccagtgctggtgcatctctgctgctgatccgggtacagcacatgcaggggctgggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccagtgctggtgcatctctgctgctgatccgggtacagcacatgcaggggctgggaaa 260
Query: 61 acagagtcagggttccagagctgctagggaactggacctgccctggtgaggatctgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagtcagggttccagagctgctagggaactggacctgccctggtgaggatctgggag 320
Query: 121 gcagcgagcagaccggaagcagtgcactttcccagagctccagccctccagcagccttgg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gcagcgagcagaccggaagcagtgcactttcccagagctccagcgctccagcagccttgg 380
Query: 181 agacaggaaaacgaagaaactttccaagaagagaaccttagacacagttcctcatgaggg 240
|||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 agacaggaaaac--------tttccaagaagagaaccttagacacagttcctcacgaggg 432
Query: 241 agagctccaggcaaagatcaagatggagaccaacaagccaaggattgtgactgccagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agagctccaggcaaagatcaagatggagaccaacaagccaaggattgtgactgccagata 492
Query: 301 aggtcagcaagccgtctaccagatgtggatcattccttccttgtaccagggaggtgggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aggtcagcaagccgtctaccagatgtggatcattccttccttgtaccagggaggtgggac 552
Query: 361 agtggacacagagaggagctc 381
|||||||||||||||||||||
Sbjct: 553 agtggacacagagaggagctc 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
