BAC Information

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BAC

Clone NameMSMg01-089G15
Chromosome11 (Build37)
Map Location 85,344,412 - 85,476,421
singlet/doubletdoublet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G15.T7 (MSMg01no089_g15.b1)MSMg01-089G15.TJ (MSMg01no089_g15.g1)
ACCAG307918AG307919
length664775
length of high quality
(start - end)
372 (15 - 386)216 (189 - 404)
definitionCHROMAT_FILE: MSMg01no089_g15.b1 PHD_FILE: MSMg01no089_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:12 2005CHROMAT_FILE: MSMg01no089_g15.g1 PHD_FILE: MSMg01no089_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,344,412 - 85,344,772)(85,476,206 - 85,476,421)
sequence
CGACTCCTATTCCGAGAGGATCCGCGGAATTCTCTTCCTGACACTATTTT
TTATTGAATCTGTATTTGTGGTACAAATTAGGAAAAACTATCCTTACTTC
TCAGTACCCATCAAAAGGCAAACCAGCTTCTTTTACAGTTCTCATAGTAA
GGAGAAATAGTGAATTTTTATCAAAACAGTGGCCTTTCTAAGGATGAACA
AAAAACCATACTGCATTTAGAAACAAGAATTCTGGGGGCTATGAAACCTG
GCAAATTGCTGATGTATAAGTGTGAAAACCTGAGGTTTCGGTCTGTAGCA
CTCATCTACAAAGCCATGTCCAACAGCACAGATATTCCCAGTGTTGAGGG
CTGAAACCTACCTGAGAGTTCCCTATTCAGCCTACCTACCCGACCCAGCG
TGTGCGTGTGTTAGTTTCAGTCCAATGCCCTGTCTTATAGCGTACAGTGA
ATATTGACCTCGGAAATGCCCGACATGGACCTTTATGTGCACACTCGTAT
GAGTGTACCTTTGCGCCTTTGTTCCCCCCTCCTCGTTTTATTATCCCCTT
TTCTGCGACTTTCCCCTATTATCCGCTTATGCCCTACCCTCTCCGCCCTA
GCTACAGCTTGTATGTTTTTTTCCCCCTCTTTTACTCATCCTTTATTTTC
TCCCCACCCCCTTT
TTTTTGGTGTTGTGNTTTTTTTCCCGTTCTTTTTTTTTCTTTTCTTACCN
NNNNCAAACGATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGTAGAAAGCAAAAGC
ACTTAGAAACTTCCAAAGGCTTGAATTAGCACGACTTGTTTCACTCACCC
TGACCCCAGCCAAATGTATTCCACATAAACACTTCTGGAAAAAATTCAGA
GCAACAAATAGAACGAATTATGAGCATATCTATGACCGAATTTAAACAGC
AGGAAAAACCACGGATACATAGGAAAAGGTATAAACAGAGCTGGCTCTGG
GCAACACAGGGTAAAGCTGTGTGCATACACAGAAAAACAAAGCGAAGGTA
CAGGGACAGGCAGGTATTTTTTTTAACATACCCCCCACCACAAAACCCAC
TTATACAATGTGTATGGCTTCATAACCCACCTACATTGTATAACACCCAA
CAAAGAGGAAAGGCTGTCTCTCAAAGCATCTGAGTTAAGGTGTGCACATG
CTTAAACACCCTGCTCTGACTTCCTATTACATCTCTCATCAAGAAATACT
ATTTAGTTAAAAGACAATATAGAAGCAAACTGTACCTTTGTGAAAAACCC
CTATTTGCTATTCAATTTGAACACTAAACGGAAAATTTAAGGTAATTTTG
TCTTGTAACCCGGCTATTTACTTTAATCCTATCGCCCATCCCCTAACTAT
ACATTATCCCCAATCTCTTACACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g15.b1 MSMg01no089_g15.b1 CHROMAT_FILE:
MSMg01no089_g15.b1 PHD_FILE: MSMg01no089_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:12 2005
         (372 letters)



>mm_chr11_85344201_85344972
          Length = 772

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggaattctcttcctgacactattttttattgaatctgtatttgtggtacaaattaggaaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggaattctcttcctgacactattttttattgaatctgtatttgtggtacaaattaggaaa 271

                                                                       
Query: 72  aactatccttacttctcagtacccatcaaaaggcaaaccagcttcttttacagttctcat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aactatccttacttctcagtacccatcaaaaggcaaaccagcttcttttacagttctcat 331

                                                                       
Query: 132 agtaaggagaaatagtgaatttttatcaaaacagtggcctttctaaggatgaacaaaaaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agtaaggagaaatagtgaatttttatcaaaacagtggcctttctaaggatgaacaaaaaa 391

                                                                       
Query: 192 ccatactgcatttagaaacaagaattctgggggctatgaaacctggcaaattgctgatgt 251
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 392 ccatactgcatttagaaacaagaattctgggggctatgaaacctggtaaattgctgatgt 451

                                                                       
Query: 252 ataagtgtgaaaacctgaggtttcggtctgtagcactcatctacaaagccatgtccaaca 311
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 452 ataagtgtgaaaacctgaggtttcggtttgtagcactcatctacaaagccatgtccaaca 511

                                                                       
Query: 312 gcacagatattcccagtgttgagggctgaaacctacctgagagttccctattcagcctac 371
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 512 gcacagatattcccagtgttgagggctgaaacctacctgagagctccctatccagcctac 571

            
Query: 372 c 372
           |
Sbjct: 572 c 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no089_g15.g1 MSMg01no089_g15.g1 CHROMAT_FILE:
MSMg01no089_g15.g1 PHD_FILE: MSMg01no089_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:12 2005
         (216 letters)



>mm_chr11_85476006_85476621
          Length = 616

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcactcaccctgaccccagccaaatgtattccacataaacacttctggaaaaaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttcactcaccctgaccccagccaaatgtattccacataaacacttctggaaaaaattca 357

                                                                       
Query: 61  gagcaacaaatagaacgaattatgagcatatctatgaccgaatttaaacagcaggaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagcaacaaatagaacgaattatgagcatatctatgaccgaatttaaacagcaggaaaaa 297

                                                                       
Query: 121 ccacggatacataggaaaaggtataaacagagctggctctgggcaacacagggtaaagct 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccacgtatacataggaaaaggtataaacagagctggctctgggcaacacagggtaaagct 237

                                               
Query: 181 gtgtgcatacacagaaaaacaaagcgaaggtacagg 216
           |||||||||||||||||||||||| |||||||||||
Sbjct: 236 gtgtgcatacacagaaaaacaaagtgaaggtacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)