BAC Information

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BAC

Clone NameMSMg01-089G19
Chromosome11 (Build37)
Map Location 90,456,493 - 90,456,837
singlet/doubletsinglet
Overlap geneStxbp4
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf
Downstream geneLOC100039267, Cox11, Tom1l1, LOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G19.T7 (MSMg01no089_g19.b1)MSMg01-089G19.TJ (MSMg01no089_g19.g1)
ACCAG307926AG307927
length744772
length of high quality
(start - end)
319 (38 - 356)344 (124 - 467)
definitionCHROMAT_FILE: MSMg01no089_g19.b1 PHD_FILE: MSMg01no089_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:13 2005CHROMAT_FILE: MSMg01no089_g19.g1 PHD_FILE: MSMg01no089_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCAT
TGTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTC
TGTATCTATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGC
TATTATAAATAAGGCTTCTATGAACATAGTGTAGCATGTGTCCTTATTAC
AAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGTATGT
CTAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTAGTTGTACCAGC
TTGTAATCTCACCAACATTAGAGTGCCCCTTTTTCTCCACATTCTCGCCA
GCATCTGCTGTCACCTGAATTCTTGATCTTATCCATTCTGACTGGTGTGA
GGTGCAATCCCCCCCCTGCTTTGAATTGCATTTTCCTGATGACTATGTAT
GCTTAACATTTTTTTTCCTCGCCCCCCCAATCATCTCTTTATCTCTCCCC
CTGCTTTTTCTTTATCCCTTGACCGCATTTTTCCTGGTCTATTTCTCCTT
CCTGACTATTCCCCTTTCAACCTTTCTGCCTTTTTATTTCCCCCCTTCCT
TGCTTTTTTTTTTTCCCTTTTTCTTCCCCTTTTTCCCCTTTTTTTCCCCT
TTTTCCCCCCTCCCTTACCGCGCTTAATTCTCCTTTTCTTCCTTTTTACC
TCCCTCTTATTCCTCTCCCAATATATTACCCCCCTCCCCCTTCT
TTTTTCCCTTCTTCCTTTTCTTCCTTTTTCTTCCNCCCCCCCCACCTNTT
CTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTATAGATAACATGAGGAAAAAAA
AAAGAATGTGAAAAATACTTGCCTGCTATCTTGAGAGTATAAATGAAGTT
GACAGAATTAGGTTAAATGGAAAATATTCTTAATTTTGGCTGGTTTAGGG
CTACACTTACTTACACTACTGGAAAAATAAAGAAAAGTTTTCCCTAACAC
TCATTTCTGTCAGGCTCTTTTCTTTGGATGAAGTCACTTCTGCCTTTCAA
ACAGAGATGGAGATGCTCCCACTTGTACTCCACTGTCCTTCCCGTGTTCT
ATAGCCTTAGACAGAACACTCGTAATTTTCAGCCAAAAGGCATTTGAAGC
CCACTTTGCCCCTGATGACGTCCTGGGGCTATGTGCTAGCCAATGCGGAA
GTGCTGGAGAACATTCAGGAAGTCTCCTATCAGAAGAACAAGCACTTTTC
CTCCTTGTCTTAATAAAAGGGGAGAAAGGAAAGAGAAGACTTATTCAGCC
ACCTTGACTCACAAGGACCCCTTCACAATGCTGTCGGAAACAGCCTACTA
GGCAACTCTCTATTATGATGTCTGCAATCCGGCCCTGTTTGCCGTACTCC
TTTTATTCCCCCCCTTTGTCAACTTCATTCCCGCCCCCCTTCTGAGTTTG
ATGTCCCGTCCATGTCTTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g19.g1 MSMg01no089_g19.g1 CHROMAT_FILE:
MSMg01no089_g19.g1 PHD_FILE: MSMg01no089_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:13 2005
         (344 letters)



>mm_chr11_90456293_90457037
          Length = 745

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttatagataacatgaggaaaaaaaaaag-aatgtgaaaaatacttgcctgctatctt 59
           ||||||||||||||||||||||||||||||| || ||||||||||||||  |||||||||
Sbjct: 201 aatttatagataacatgaggaaaaaaaaaagaaacgtgaaaaatacttggttgctatctt 260

                                                                       
Query: 60  gagagtataaatgaagttgacagaattaggttaaatggaaaatattcttaattttggctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagtataaatgaagttgacagaattaggttaaatggaaaatattcttaattttggctg 320

                                                                       
Query: 120 gtttagggctacacttacttacactactggaaaaataaagaaaagttttccctaacactc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttagggctacacttacttacactactggaaaaataaagaaaagttttccctaacactc 380

                                                                       
Query: 180 atttctgtcaggctcttttctttggatgaagtcacttctgcctttcaaacagagatggag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctgtcaggctcttttctttggatgaagtcacttctgcctttcaaacagagatggag 440

                                                                       
Query: 240 atgctcccacttgtactccactgtccttcccgtgttctatagccttagacagaacactcg 299
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctcccacttgtactccactgtctttcccgtgttctatagccttagacagaacactcg 500

                                                        
Query: 300 taattttcagccaaaaggcatttgaagcccactttgcccctgatg 344
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taattttcagccaaaaggcatttgaagcccactttgcccctgatg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)