Query= MSMg01no089_p24.b1 MSMg01no089_p24.b1 CHROMAT_FILE:
MSMg01no089_p24.b1 PHD_FILE: MSMg01no089_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
(607 letters)
>mm_chr11_44683226_44684232
Length = 1007
Score = 1123 bits (581), Expect = 0.0
Identities = 599/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 4 ggaattctatgtttctaacaagctcccaggtgacgtagaaccagggaacagatcgcaagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatgtttctaacaagctcccaggtgacgtagaaccagggaacagatcgcaagt 263
Query: 64 agcaaagttaagtccccgccctgcactgctctccgtctcactttgtgggtaaggtatttg 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcaaagttaagtcccggccctgcactgctctccgtctcactttgtgggtaaggtatttg 323
Query: 124 ccctgtcaacgttattcgtgcttgctcaacctgtcacagagacagcttgctgttgaaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctgtcaacgttattcgtgcttgctcaacctgtcacagagacagcttgctgttgaaagt 383
Query: 184 ttgctcctacgcctgtttagtcagctcaaagtgcagttttaagtgtataggctccaaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgctcctacgcctgtttagtcagctcaaagtgcagttttaagtgtataggctccaaaag 443
Query: 244 gtgcttgataaatttcagctacgggatctctgaagggaaataaggagtttctgagcattg 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgcttgataaatttcagctatgggatctctgaagggaaataaggagtttctgagcattg 503
Query: 304 attgtggatgtcaatatcatagtcttcaaaatgattttttttaaaagaaagtgagactta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attgtggatgtcaatatcatagtcttcaaaatgattttttttaaaagaaagtgagactta 563
Query: 364 ttagtctcattaaagaataaatcccgtggaaggatgttatcgtctcctgagatcttagag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagtctcattaaagaataaatcccgtggaaggatgttatcgtctcctgagatcttagag 623
Query: 424 aatttctataaaatcatgttagccttaccacatttagtcttgatagagctgtatctggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatttctataaaatcatgttagccttaccacatttagtcttgatagagctgtatctggag 683
Query: 484 aatccaataaagttttagtttcttagaaaccatttcctgtccacctctgccat-caaatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 684 aatccaataaagttttagtttcttagaaaccatttcctgtccacctctgcc-tgcaaatg 742
Query: 543 gtgatgctactgctttcaaagtatcttttttcagcttatgctatttgatagcttgctgca 602
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgatgctactgttttcaaagtatcttttttcagcttatgctatttgatagcttgctgca 802
Query: 603 gtttt 607
|||||
Sbjct: 803 gtttt 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_p24.g1 MSMg01no089_p24.g1 CHROMAT_FILE:
MSMg01no089_p24.g1 PHD_FILE: MSMg01no089_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:01 2005
(521 letters)
>mm_chr11_44806435_44807357
Length = 923
Score = 909 bits (470), Expect = 0.0
Identities = 480/484 (99%), Gaps = 2/484 (0%)
Strand = Plus / Minus
Query: 1 cctcagatataactcagggccaggatgagctgcccaccttccagttgttagccacaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cctcagatataactcagggccaggatgagctgcccaccttccagttgttagccacaaatt 588
Query: 61 acactcaatgaagagccagcactgttttctatactttgagctaagagactcatggatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acactcaatgaagagccagcactgttttctatactttgagctaagagactcatggatatt 528
Query: 121 ctttcatttggcaacacacacttgttcctttacaaatgtctccgcattctaaccacattt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctttcatttggcaacacactcttgttcctttacaaatgtctccgcattctaaccacattt 468
Query: 181 tctgcatcagaagaactctccacaaagttccacatgaacttgcccatctatggaaaggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctgcatcagaagaactctccacaaagttccacatgaacttgcccatctatggaaaggtc 408
Query: 241 ctcagagg--gagcaagaggttgtggggaaagagcctgtgacattttatagtgagaaatg 298
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctcagagggagagcaagaggttgtggggaaagagcctgtgacattttatagtgagaaatg 348
Query: 299 ccagtttggggaggatctttagatgtatgcatttatatataaagatgccagtttgctgca 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccagtttggagaggatctttagatgtatgcatttatatataaagatgccagtttgctgca 288
Query: 359 ttctttagacacagtggcagtgttgtgcccaaacaaacaaatcctttaagctaaaggtgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttctttagacacagtggcagtgttgtgcccaaacaaacaaatcctttaagctaaaggtgt 228
Query: 419 gaatagggcacctagaaatatttatattctctctctctctctctctctctctctctctct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaatagggcacctagaaatatttatattctctctctctctctctctctctctctctctct 168
Query: 479 ctct 482
||||
Sbjct: 167 ctct 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space: 466543
Effective search space used: 466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
