This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-089P24
Chromosome
11 (Build37)
Map Location
44,683,429 - 44,807,081
singlet/doublet
doublet
Overlap gene
Ebf1
Upstream gene
Il12b
,
Ublcp1
,
3732413I11Rik
Downstream gene
LOC382510
,
LOC633082
,
Clint1
,
Lsm11
,
Thg1l
,
Sox30
Link
Open Mouse BAC browser
Click to get alignment info.
name
Il12b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16160
MGI:96540
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ublcp1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:79560
MGI:1933105
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
3732413I11Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74315
MGI:1921565
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ebf1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13591
MGI:95275
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC382510
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:382510
definition
gene_synonym
: Gm1911
note
: tRNA-yW synthesizing tRNA-yW synthesizing pseudogene
pseudo
: _no_value
name
LOC633082
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:633082
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1381 ESTs, 12 Proteins
pseudo
: _no_value
name
Clint1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:216705
MGI:2144243
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lsm11
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:72290
MGI:1919540
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Thg1l
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66628
MGI:1913878
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Sox30
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:214105
MGI:1341157
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Il12b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892765
GeneID:16160
MGI:96540
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: interleukin 12b
transcript_id
: NM_008352.2
name
Ublcp1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382229
GeneID:79560
MGI:1933105
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ubiquitin-like domain containing CTD phosphatase 1
transcript_id
: NM_024475.4
name
3732413I11Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801878
GeneID:74315
MGI:1921565
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 3732413I11 gene
transcript_id
: NM_028862.2
name
Ebf1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131118
GeneID:13591
MGI:95275
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: early B-cell factor 1
transcript_id
: NM_007897.2
name
Clint1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113865872
GeneID:216705
MGI:2144243
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: clathrin interactor 1
transcript_id
: NM_001045520.1
name
Lsm11
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:115311556
GeneID:72290
MGI:1919540
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: U7 snRNP-specific Sm-like protein LSM11
transcript_id
: NM_028185.2
name
Thg1l
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124377987
GeneID:66628
MGI:1913878
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
transcript_id
: NM_001080969.1
name
Sox30
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:27734193
GeneID:214105
MGI:1341157
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: SRY-box containing gene 30
transcript_id
: NM_173384.1
name
Il12b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6680397
CCDS:CCDS24563.1
GeneID:16160
MGI:96540
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005125 - cytokine activity [Evidence IEA]; GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0042164 - interleukin-12 alpha subunit binding [Evidence IPI]; GO:0005143 - interleukin-12 receptor binding [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence IDA]
GO_process
: GO:0019735 - antimicrobial humoral response (sensu Vertebrata) [Evidence ISS]; GO:0007166 - cell surface receptor linked signal transduction [Evidence IDA]; GO:0042095 - interferon-gamma biosynthesis [Evidence ISS]; GO:0030101 - natural killer cell activation [Evidence ISS]; GO:0042104 - positive regulation of activated T cell proliferation [Evidence ISS]; GO:0045078 - positive regulation of interferon-gamma biosynthesis [Evidence ISS]; GO:0042035 - regulation of cytokine biosynthesis [Evidence ISS]; GO:0042093 - T-helper cell differentiation [Evidence ISS]
codon_start
: 1
note
: IL-12 p40; IL-23 subunit p40
product
: interleukin 12b
protein_id
: NP_032378.1
name
Ublcp1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46575895
CCDS:CCDS24564.1
GeneID:79560
MGI:1933105
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]
GO_process
: GO:0006464 - protein modification [Evidence IEA]
codon_start
: 1
product
: ubiquitin-like domain containing CTD phosphatase 1
protein_id
: NP_077795.2
name
3732413I11Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037357
CCDS:CCDS24565.1
GeneID:74315
MGI:1921565
definition
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: hypothetical protein LOC74315
protein_id
: NP_083138.1
name
Ebf1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6681253
CCDS:CCDS24566.1
GeneID:13591
MGI:95275
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: early B-cell factor 1
protein_id
: NP_031923.1
name
Clint1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:113865873
GeneID:216705
MGI:2144243
definition
GO_function
: GO:0008289 - lipid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]
GO_process
: GO:0006897 - endocytosis [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: enthoprotin; ENTH domain containing protein; epsin 4
product
: clathrin interactor 1
protein_id
: NP_001038985.1
name
Lsm11
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29789219
GeneID:72290
MGI:1919540
definition
GO_component
: GO:0030529 - ribonucleoprotein complex [Evidence IEA]
GO_function
: GO:0003723 - RNA binding [Evidence IEA]
GO_process
: GO:0016071 - mRNA metabolism [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]
codon_start
: 1
product
: U7 snRNA-associated Sm-like protein Lsm11
protein_id
: NP_082461.1
name
Thg1l
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124377988
GeneID:66628
MGI:1913878
definition
codon_start
: 1
note
: nterphase cyctoplasmic foci protein 45
product
: interphase cyctoplasmic foci protein 45
protein_id
: NP_001074438.1
name
Sox30
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27734194
CCDS:CCDS24570.1
GeneID:214105
MGI:1341157
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]
GO_process
: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: SRY-box containing gene 30
protein_id
: NP_775560.1
name
LOC633082
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149261858
GeneID:633082
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 1381 ESTs, 12 Proteins
product
: similar to ferritin light chain 2
pseudo
: _no_value
transcript_id
: XR_031255.1
clone name
MSMg01-491M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544C13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-360I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132I24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237J01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332M21
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-232E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-382J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-099N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-165B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275N19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119G06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-193A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-269N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065H10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-499B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-180I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072C06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-216F10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-063F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373M07
singlet/doublet
doublet
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doublet
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doublet
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doublet
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doublet
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doublet
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doublet
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doublet
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