Query= MSMg01no090_c03.b1 MSMg01no090_c03.b1 CHROMAT_FILE:
MSMg01no090_c03.b1 PHD_FILE: MSMg01no090_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:11 2005
(570 letters)
>mm_chr11_88188315_88189284
Length = 970
Score = 1029 bits (532), Expect = 0.0
Identities = 549/560 (98%), Gaps = 11/560 (1%)
Strand = Plus / Plus
Query: 12 ggaattccccgtgtctttctcccactggacaagaaagccatgtctgtttctttaatagat 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggaattccccgtgtctttctcccactggacaagaaagccatgtctgtttctttaatagat 271
Query: 72 gaaggtgctgcagctgagaggggggaagtaaacgggcacgaggctaggtgaaggagggag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaaggtgctgcagctgagaggggggaagtaaacgggcacgaggctaggtgaaggagggag 331
Query: 132 acagctcagttggtataatgcttgcattgccagtacaaagacctgagtttgattcctaga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acagctcagttggtataatgcttgcattgccagtacaaagacctgagtttgattcctaga 391
Query: 192 acccacataaaaaaaataataataattaaaaaaaaaaa-gccagccagtcatgatggcac 250
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 392 acccacataaaaaaaa--ataataattaaaaaaaaaaaagccagccagtcatgatggcac 449
Query: 251 atccttgtgatcccagaactgggaaggtggagtcaggtggatcctggggcttgctgaata 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atccttgtgatcccagaactgggaaggtggagtcaggtggatcctggggcttgctgaata 509
Query: 311 actagcctagcttatttggcaagctccaggacaatgagagaccctgcttcgataaaccag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 actagcctagcttatttggcaagctccaggacaatgagagaccctgcttcgataaaccag 569
Query: 371 gaggacagtgcttctggaatgccacccacagtaaacacacacacacacacacacacacac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaggacagtgcttctggaatgccacccacagtaaacacacacacacacacacacacacac 629
Query: 431 acacacacacatacatgcacacacacatacatatatacaaacacacacatgcacacgcac 490
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aca--------tacatgcacacacacatacatatatacaaacacacacatgcacacgcac 681
Query: 491 acatacatatataaacatacacatacccctcatgttctcacttaacgcccctccctacct 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acatacatatataaacatacacatacccctcatgttctcacttaacgcccctccctacct 741
Query: 551 catcttcctcctctgtgagg 570
||||||||||||||||||||
Sbjct: 742 catcttcctcctctgtgagg 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_c03.g1 MSMg01no090_c03.g1 CHROMAT_FILE:
MSMg01no090_c03.g1 PHD_FILE: MSMg01no090_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:12 2005
(471 letters)
>mm_chr11_88319785_88320655
Length = 871
Score = 907 bits (469), Expect = 0.0
Identities = 469/469 (100%)
Strand = Plus / Minus
Query: 1 ctggacctctcttgagtcctgctctcaaggaagcctggggctgtgtatttaacaaggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctggacctctcttgagtcctgctctcaaggaagcctggggctgtgtatttaacaaggcca 610
Query: 61 ccagatgtgctccctggactggtgagtggctgggagccacagcactgtcctcactggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccagatgtgctccctggactggtgagtggctgggagccacagcactgtcctcactggcaa 550
Query: 121 tgccagcacagccctggtgtcagcatagaggctgttgatggctttgagcaccaggtgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgccagcacagccctggtgtcagcatagaggctgttgatggctttgagcaccaggtgctc 490
Query: 181 tgaactcatcctgtggaccagggagcgagtcctagagacacagtacaccccactgggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgaactcatcctgtggaccagggagcgagtcctagagacacagtacaccccactgggcct 430
Query: 241 gagtgatggatcgtgggagcagtggtctcagattacattagagccagagaggacacatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gagtgatggatcgtgggagcagtggtctcagattacattagagccagagaggacacatgc 370
Query: 301 aattctcttcacgtttcccgattcctaaatgagagaactgatagttgaagaggaagagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aattctcttcacgtttcccgattcctaaatgagagaactgatagttgaagaggaagagtt 310
Query: 361 atgcccagggacatgcccatggcagagctggtcccactgaagttcctcctaaggaggaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atgcccagggacatgcccatggcagagctggtcccactgaagttcctcctaaggaggaac 250
Query: 421 gcgccaaaggagatgtcaccctttgccttgccattgctaagatgattta 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcgccaaaggagatgtcaccctttgccttgccattgctaagatgattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
