BAC Information

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BAC

Clone NameMSMg01-090E21
Chromosome11 (Build37)
Map Location 69,624,327 - 69,624,546
singlet/doubletsinglet
Overlap genenone
Upstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102
Downstream gene4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E21.T7 (MSMg01no090_e21.b1)MSMg01-090E21.TJ (MSMg01no090_e21.g1)
ACCAG308573AG308574
length768784
length of high quality
(start - end)		373 (103 - 475)220 (130 - 349)
definitionCHROMAT_FILE: MSMg01no090_e21.b1 PHD_FILE: MSMg01no090_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:25 2005CHROMAT_FILE: MSMg01no090_e21.g1 PHD_FILE: MSMg01no090_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTNTTTTNTTTTTNNNTTTGTTA
TTANNAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAAGCCAGCCAAGGAAACCTAGTGAGATCCCGTCTCAG
AAAAAAAATAATAGGGGCTGGAAAGATGTCTCAGTGATAAAGAGCACTGA
CGGCTCTTCCAGAGGAACTGGGTTCAATTCCCAGCACTCACATGCTCACT
ATCTGTAACTCTAGATCAAGGACATCTGACACCTTCACACAGACATGAAT
ACACTCAAAACCACTAATGCATGCTCAATTTTTAAAAAATTAAAAGAAAA
ATACTACTAAAAATGAATCCAAGGGTCTAGAGAGATGGCTCAGTTAAGAG
TGCCTGCTGTCCTTGTTTTATTCCCCCCCCCCCCCCGTCAGCACCTACAC
CGGGTACCTGTATTTCCAGCTCCCAGGTGTCAAATGACCTCTTCTGGCTG
CCTTGGGCATCTATACTCACTGTACACACATAAACACAGACTCACATATA
TTCACATACCTAGAATGAGATAAAATCCTGTTAGAAAATCATACACTTGC
TGTGTGGTGTTGGCGCACACCCTTAATCCAAGCACTTGGTAAATATAGCC
AGGAGAATTTCTGAGTTCGATGGCATACTGATCTAAAAAGAGAGTTCCCT
GAATGTCAAGTGATATTCTTATTAACCCTGCCTCGATATACCTTTTTCAC
AATCTACTCTTCTTTTAG

TTTTTTTNNNNNNNNNTTTTTTTNNTTTTTTTNTTTTNNGNNNCGCTTTN
NNNGGCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAACTCCTGATCCTCCT
ACCTCCACTCAAGTGCTGGGGCTCAGGTGTGCAACACAACACTTGGTGAG
AATTTTAAATTTTAATTGACATTCTAATAGTCACATTTGGCTAGTGGTTA
GTATCTTTTTTTCTTTTTCCCCAAAAATTAACTCTTGAGCCTGGCTATGG
AGCTGTGAAGGGTAATAGGAACGTGTTAATTCTGTGTCTGTTTAAGATGG
GCATGTTCATTATCCATGGTATTGCTGTGATGGAGGACCTCAACCAGCCA
CAGAATGCTTCTCTTGTTTCCCCCCTACACCCCCGAGTTTGTCCCCTCTG
TGTTCAAGGTCCTCATCACCCCCTGATAACACAACTCCTTCTGGGGGCCT
GAGTTTCTGGTTGACTCTTGACGGATCTGTCTGTACAAGATAGCTTCACA
CTTTACCCTGCCAGCCACTAATGGTCTTCTGGTGGGAATCATAGACCAAC
TTGACCTGTCCGAATTCTTGCTCCTTTCTACCTCCGCTTTTAATTCGATT
TCCTTCACTTAATAATCTATTTGCTTTATACTTTTTGTCTCCCTTTAAAA
CACCTCTATCCCCTCCGTTTGCCATATTCCTACACTTAGTATGCACTATT
CATCCGCTAACCATTTTCGCCCCCTCAATTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e21.g1 MSMg01no090_e21.g1 CHROMAT_FILE:
MSMg01no090_e21.g1 PHD_FILE: MSMg01no090_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:25 2005
         (220 letters)



>mm_chr11_69624127_69624746
          Length = 620

 Score =  410 bits (212), Expect = e-119
 Identities = 218/220 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaaactcctgatcctcctacctccactcaagtgctggggctcaggtgtgcaacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaaactcctgatcctcctacctccactcaagtgctggggctcaggtgtgcaacacaa 260

                                                                       
Query: 61  cacttggtgagaattttaaattttaattgacattctaatagtcacatttggctagtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttggtgagaattttaaattttaattgacattctaatagtcacatttggctagtggtt 320

                                                                       
Query: 121 agtatctttttttctttttccccaaaaattaactcttgagcctggctatggagctgtgaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatctttttttctttttccccgaaaattaactcttgagcctggctatggagctgtgaa 380

                                                   
Query: 181 gggtaataggaacgtgttaattctgtgtctgtttaagatg 220
           ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gggtaataggaacgtgttaattctgtgcctgtttaagatg 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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