BAC Information

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BAC

Clone NameMSMg01-090G01
Chromosome11 (Build37)
Map Location 101,649,492 - 101,780,934
singlet/doubletdoublet
Overlap geneMeox1
Upstream geneStat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
Downstream geneLOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090G01.T7 (MSMg01no090_g01.b1)MSMg01-090G01.TJ (MSMg01no090_g01.g1)
ACCAG308625AG308626
length766777
length of high quality
(start - end)
438 (109 - 546)285 (144 - 428)
definitionCHROMAT_FILE: MSMg01no090_g01.b1 PHD_FILE: MSMg01no090_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:31 2005CHROMAT_FILE: MSMg01no090_g01.g1 PHD_FILE: MSMg01no090_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,780,625 - 101,780,934)(101,649,492 - 101,649,773)
sequence
NCCCCNNCCCCNNCCCCCCCCCCCCCCCNNCNCCCCCCCCCCCCNNCCNN
TCTCTTATACCTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTACCATAGCCAGAGAACCCCATGGATAGAACA
GAAGGGTACTGGAATTTTGCTCAGAGCTCCTTACTACCACCCATCTAAAC
TACTAGGCCTTTCCAGACAGATGACAGAACACATTCTTCAGGAATTATTT
ATGAAAGAAATCTGGGGACCAAGAACATGGTTCTTACTGCTGACCTGCAT
TCGATACCCAGGACTCTCGTGGAAGGAGGGATGTGGTGCCCACCAAGATG
CACATGCACATGGTGAGAATTATTTGGTCTAAAATGGCAGTGCTGAGGAG
GAGAGTCCTGCATTGAGGAGCGTCAAGGACTCCACTTTCCAGTGAGCAGC
TTCCCAGCAGCTGTGTGAAGCCACTGTGAAACCCTGTGTGAAACATTTCT
ACACGACACAGACTGGAAAAGGCCCTTTGGTAGCTGTGAGCATCTAACAA
GACCAAAGCCCACTTGGAAGAGGGGGCAGTGTGCCAGGAAAGTGGGCTGA
CATCCCAGTAGACTAGGGATACATCTCATCGCCTCCTAGGTCACACTAAT
TCTTTGGACTTTATTTCCCAGCCTCTACAAAGTAGGATTCACACACTGCT
TCCCTTCGTTCTCTTAATCCTGGCATTTCCCCCCTGATACATCCTTCCAC
CTGGTCTATCACGTCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNN
NNNNCCTTTTTNNCTCACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATATA
GCTGAGAATGGCTTTAAAATGTTGATTCTCCTGCCTCTGTCTACTTACCG
CTTGGTCTTTTGCAACAGGGTCAGATTCTGGGTCTCCCAGGCTGAACTTG
TCTTCCTGGAATGCTGGAATTACGGGTGAGTGACACCACACCTGGCCCAC
ATAGGCTTAGGGGAATGAATAATGGGGGTCTGGATTTGGTCCTTGGTGTT
GTGTCAGCTGAGGGCATTCCGTGGGTAACCTGTCCAGCCTGACTGTCTGC
AGGGACAGAGGTGTTTTTAGGCCTGTTTTCTTTCCCACCCCCCCCCCAGA
GTTTCGGGCACTTAAAGGGGGAAAGCTGAGACAGATACCTAAAGCCCAGG
GTTGAGACAAATAGGATCCCTTGGGTGTCCCCAAGGCTGGAACTTTCTCA
CCAGGGAGAATTGAACCATAGAGCAAGGTCTGTGGTCGGTTGGGGTTGTC
ACATCTCATTCCCTGAACTGTAGATGCCTCACTACCACGTCATTAAATAA
TCCCCATCAAGGACCCATATAAATCCCTCATGCCCCTCTTGCATTACATT
ATCCCTTTTCCTACACTTTCCCCGGTTCTCTTTAGTTCCGCTCCAACTGG
ACGCCGCTCCTACACCCTCCTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_g01.b1 MSMg01no090_g01.b1 CHROMAT_FILE:
MSMg01no090_g01.b1 PHD_FILE: MSMg01no090_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:31 2005
         (438 letters)



>mm_chr11_101780409_101781246
          Length = 838

 Score =  522 bits (270), Expect = e-152
 Identities = 300/310 (96%)
 Strand = Plus / Minus

                                                                       
Query: 17  agccagagaaccccatggatagaacagaagggtactggaattttgctcagagctccttac 76
           ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || 
Sbjct: 526 agccagagaaccccacggatagaacagaagggtactggaattttgctcagcgctccctag 467

                                                                       
Query: 77  taccacccatctaaactactaggcctttccagacagatgacagaacacattcttcaggaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 taccacccatctaaactactaggcctttccagacagatgacagaacacattcttcaggaa 407

                                                                       
Query: 137 ttatttatgaaagaaatctggggaccaagaacatggttcttactgctgacctgcattcga 196
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 406 ttatttatgaaagaaatctgggtaccaacaacatggttcttactgctgacctgcattcga 347

                                                                       
Query: 197 tacccaggactctcgtggaaggagggatgtggtgcccaccaagatgcacatgcacatggt 256
           |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct: 346 tacccaggactctcgtggaaagagagatgtggtgcccaccaagatgcatatgcacatggt 287

                                                                       
Query: 257 gagaattatttggtctaaaatggcagtgctgaggaggagagtcctgcattgaggagcgtc 316
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 286 gagaattatttggtctaaaatggcagtgctgaggaggagagtcctgcattgaggagcgcc 227

                     
Query: 317 aaggactcca 326
           ||||||||||
Sbjct: 226 aaggactcca 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no090_g01.g1 MSMg01no090_g01.g1 CHROMAT_FILE:
MSMg01no090_g01.g1 PHD_FILE: MSMg01no090_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:31 2005
         (285 letters)



>mm_chr11_101649292_101649976
          Length = 685

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatatagctgagaatggctttaaaatgttgattctcctgcctctgtctacttaccgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatatagctgagaatggctttaaaatgttgattctcctgcctctgtctacttaccgctt 260

                                                                       
Query: 61  ggtcttttgcaacagggtcagattctgggtctcccaggctgaacttgtcttcctggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcttttgcaacagggtcagattctgggtctcccaggctgaacttgtcttcctggaatg 320

                                                                       
Query: 121 ctggaattacgggtgagtgacaccacacctggcccacataggcttaggggaatgaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaattacgggtgagtgacaccacacctggcccacataggcttaggggaatgaataat 380

                                                                       
Query: 181 gggggtctggatttggtccttggtgttgtgtcagctgagggcattccgtgggtaacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggtctggatttggtccttggtgttgtgtcagctgagggcattccgtgggtaacctgt 440

                                                     
Query: 241 ccagcctgactgtctgcagggacagaggtgtttttaggcctg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagcctgactgtctgcagggacagaggtgtttttaggcctg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)