BAC Information

Click to search

BAC

Clone NameMSMg01-090G07
Chromosome11 (Build37)
Map Location 79,222,284 - 79,222,588
singlet/doubletsinglet
Overlap geneNf1
Upstream geneSlc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneOmg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090G07.T7 (MSMg01no090_g07.b1)MSMg01-090G07.TJ (MSMg01no090_g07.g1)
ACCAG308637AG308638
length766766
length of high quality
(start - end)
308 (107 - 414)243 (133 - 375)
definitionCHROMAT_FILE: MSMg01no090_g07.b1 PHD_FILE: MSMg01no090_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:32 2005CHROMAT_FILE: MSMg01no090_g07.g1 PHD_FILE: MSMg01no090_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAA
AAAATNCTAACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTAGGATACCACACTCACAAGCACACACATGCACG
CTGTGAGAAAGCCACCAGTATTCAATCACAACATGAAAGACTAGAGCTTC
ACTTCAAACTTCTTTTACCACTTGCTCAGAAGGGAAAGGACTGGAAATAA
TACAGAAACAGGAGAGAAAACTGTAATTCCTGTTAGAGCTGAACAAAGAA
AACAGAAAAAACACTTTTGAAAAAAATAAACTGAAAAGCAGCACATTTCC
CTCTGAGAGTTTCACAAGGTGCCATGCCGCCCCTCACCCCACACCCAGTC
ACTCTTTAGCCAGCTCACCATCCATATCCCGCCCCCCGCCAATTTGGTAT
AGCTTTGTAAATTCATCCGGATAATTTTCTACCCAGATCCAAAAAGCCTA
CAAGTAACAAACACACTTGTTTTTTATAGCTAAAGCAGTCAATTTTCCAA
CATATTAAATAACACAGACATTACGCTTCTTCACACAAATATCGTGCCGA
ATTCTTTTCCATTAAGAGGAAATTAATACAATAGTCTTGACTTTCTTATA
CTCAAGATTCCGAACACGGTCCTACGACATATATCCTATCATATCTTGCC
TACCTCAATATATTCGAAGCTTTACCTTTTCCAGGATATATTATAACTGC
CCGCCGTGATAACCTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTTTC
CNNNCTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTAGACCAGGCTAG
CCTTGAACTCACAAAGGTCTGCCTGGCTCTGCCTCCTGAGTGCTGGGACT
AAAGGTGTGCACCACCATACCTAGCACTTGTTATTTTTAATGATGTTTTT
ATTACAGTGGTTTTTGGATTTATTTTGTATTTTCTATTTTTATTATGTAT
GTGTTTTGCCTGCATGTAAGTATATCATGTGTGTACCTGCTGCCTGAGGA
GTTCAGACAAGTGCCAGATCCCCTGTTACTGAAGTCACAGATGGTTTATT
TTGCTTTTGTTTGTTTTTTTTACCCCCCCCCCCAGGGTTGATTTTGAACT
GCTGATTCTCCTGCCTCCATCCCCCAAATTATGAAACCTAAGGTGGTCAC
CCCCATGCCTGACTATGGATCTTATGAGTATTAAAACCTGAGCATAGTTG
CGTAATGATACTAATGTCTGTAATGTTTGCTACCCTTAATTATATCTTCA
CTGGTCTCGTATCTACCCTTATCAAAAATATGTATTCCTTCTCCCCCCTT
CTATGTCTAAACACATCCACATAGAACACCGGTTTTTTGCCTATCAGCTT
TCGCTCCCCCCCATTATTAGTAATTAGTCCCTATTATATACCCTCCCATA
AATCCCATCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_g07.b1 MSMg01no090_g07.b1 CHROMAT_FILE:
MSMg01no090_g07.b1 PHD_FILE: MSMg01no090_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:32 2005
         (308 letters)



>mm_chr11_79222080_79222788
          Length = 709

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggatac-cacactcacaagcacacacatgcacgctgtgagaaagccaccagt 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattctaggaaacacacactcacaagcacacacatgcacgctgtgagaaagccaccagt 450

                                                                       
Query: 64  attcaatcacaacatgaaagactagagcttcacttcaaacttcttttaccacttgctcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attcaatcacaacatgaaagactagagcttcacttcaaacttcttttaccacttgctcag 390

                                                                       
Query: 124 aagggaaaggactggaaataatacagaaacaggagagaaaactgtaattcctgttagagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagggaaaggactggaaataatacagaaacaggagagaaaactgtaattcctgttagagc 330

                                                                       
Query: 184 tgaacaaagaaaacagaaaaaacacttttgaaaaaaataaactgaaaagcagcacatttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaacaaagaaaacagaaaaaacacttttgaaaaaaataaactgaaaagcagcacatttc 270

                                                                       
Query: 244 cctctgagagtttcacaaggtgccatgccgcccctcaccccacacccagtcactctttag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctctgagagtttcacaaggtgccatgccgcccctcaccccacacccagtcactctttag 210

                
Query: 304 ccagc 308
           |||||
Sbjct: 209 ccagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space:   209300
Effective search space used:   209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)