BAC Information

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BAC

Clone NameMSMg01-090J18
Chromosome11 (Build37)
Map Location 21,768,041 - 21,768,327
singlet/doubletsinglet
Overlap geneAV249152
Upstream geneLOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, Pgam1-ps1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090J18.T7 (MSMg01no090_j18.b1)MSMg01-090J18.TJ (MSMg01no090_j18.g1)
ACCAG308794AG308795
length703698
length of high quality
(start - end)
627 (41 - 667)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no090_j18.b1 PHD_FILE: MSMg01no090_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:49 2005CHROMAT_FILE: MSMg01no090_j18.g1 PHD_FILE: MSMg01no090_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGACCCATTCCTAAACATAGTAAAAGCAATATACAGCAAGACAGTAGCC
AACATCAAACTAAATGAAAACAAACATGAAGCCATCCCACTAAAATCAGG
GACTAGACAAGGCTGTCCTTTCCCCCTATCTCCTCAATATAGTACTTGAA
GATAGTAATTGCTCTACTAGCTAGAGCAATTAGACAACAAAAGGATAACA
AATGGATATAATTTGGAAAGGAAAAGTCAAACTATCACTATTTGCATATG
ATATGATAGTATACTTATGTGATCCAAAACCTCCAACAGAGAACTCCTAC
AGCTGATAAACAACTCCAGCAAAGTGGCTGGATATAAAATTAACTCAAAC
AAATCAGTAGCCTTCCTATACTCAAAGGATAAACAGGCTGATAAAGAAAT
TAGGGAAATGACACCCCTCACAATAGTCACAAACAATATAAAATATCTTG
GTGTGACTCTTACCAAACAAGTGAAAGATCTGTATGACAAGAACTTTAAG
TCTCTGAAGATAGAAATAGAAGAAAACCTCTGAAGATGGGAAGATCTCCC
ATGCTTGTAGAATGGCAGGATTAATATAGTAAAAATGGCCATCTTACCAA
AAGCAATATACAGATTCAATGCAATCCCCATCAAAATTCCAAATCAATTC
TTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGTAAACCTGTCTTTGCCTGAATGT
TTCGGTGGAAGATTTCATATGACTGGTTCAACCTCATTGCTTGTAATGAA
TCTGACTATGATATTTCAGGTTGTTTTTTTTTTTTTAATATAAGTCCATA
TAAGTCCTATGTCTCTACAAATTCATCCATTCCTTTACAATCTTCCACTT
TATCTTGTTTTCTGAATTTTATTGATATCTGTTGAAAAGTCTCTGTTTTC
ATCTCTAATTTTCTTAATTTGGATCATATTTCTCTTGGGTACTTGAGCCA
AAAGTTTATTAAATTTGTTCACTCCCTTTCCAAAGAATCAACTCTTTGTT
TTATTGATTTTTTTTTTCTGAATTTGATTTTGTTTTTGTGTTCATTTCTG
TTCAGATCTTATTTCCTTCCATCACTTCACCTGTTTCTGTTTTTCCTTTG
GTTCTTTACTTAAGATTGATTTGAGGTTTTTTTCTTTTTCTCCTCCTCTT
CTTCCTCCTTTTCCTCCTCTTTTTTTGTTTGGTTGTTTTGTTTTCATGAC
AGGGCTTCTCTGTGTAGACCTGGCCTTCCTGGAAGCCATCTGTAGACCAG
GCTGGCCTCAAACTCAGATCTGCTTATCTCTGCTTCCCGAGTTCCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_j18.g1 MSMg01no090_j18.g1 CHROMAT_FILE:
MSMg01no090_j18.g1 PHD_FILE: MSMg01no090_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:49 2005
         (291 letters)



>mm_chr11_21767971_21768657
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 285/291 (97%), Gaps = 4/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagtaaacctgtctttgcctgaatgtttcggtggaagatttcatatgactggttcaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 357 cagagtaaacctgtctttgcctgaatgtttcggtggaagatttcatatgattggttcaac 298

                                                                       
Query: 61  ctcattgcttgtaatgaatctgactatgatatttcaggttgtttttttttttttaatata 120
           |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||
Sbjct: 297 ctcattgcttgtaatgaatctgactatgatatttcaggttg----gttttttttaatata 242

                                                                       
Query: 121 agtccatataagtcctatgtctctacaaattcatccattcctttacaatcttccacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtccatataagtcctatgtctctacaaattcatccattcctttacaatcttccacttta 182

                                                                       
Query: 181 tcttgttttctgaattttattgatatctgttgaaaagtctctgttttcatctctaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcttgttttctgaattttattgatatctgttgaaaagtctctgttttcatctctaatttt 122

                                                              
Query: 241 cttaatttggatcatatttctcttgggtacttgagccaaaagtttattaaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttaatttggatcatatttctcttgggtacttgagccaaaagtttattaaa 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 687
Length adjustment: 9
Effective length of query: 282
Effective length of database: 678
Effective search space:   191196
Effective search space used:   191196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)