BAC Information

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BAC

Clone NameMSMg01-090L24
Chromosome11 (Build37)
Map Location 5,711,385 - 5,711,639
singlet/doubletsinglet
Overlap genenone
Upstream geneNf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2
Downstream genePolm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090L24.T7 (MSMg01no090_l24.b1)MSMg01-090L24.TJ (MSMg01no090_l24.g1)
ACCAG308892AG308893
length696693
length of high quality
(start - end)
576 (45 - 620)255 (76 - 330)
definitionCHROMAT_FILE: MSMg01no090_l24.b1 PHD_FILE: MSMg01no090_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:00 2005CHROMAT_FILE: MSMg01no090_l24.g1 PHD_FILE: MSMg01no090_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCATTCCCCAACATGATAAAAACAATCTACAGCAAACCAGT
AGCCAGCATCAAACTAAATGGAGAGAAGCTGGAAACAATCCCACTAAAAT
CAGAGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAATATAGTA
CTCAAAGTCCTAGCCAGAGTAATTAGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGAAAAGGAAGAAGACAAAATATCACCATTTGCAGATAATATGA
TAGTATATATAAGTGATCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAATC
AGTGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAATGAAATTAGGG
AAACAACACCCTTCACAATAGTCACAAATAATATAAAATACTTTGGTGTG
ACTCTTACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCT
GAAAAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CTTGGATTGGCAGGATCAATATAGCAAAAAATGACTATCTTGCCGAAAGC
AATTTACAGATTTCAATGCAATCCCCCATCAAAATTCCAACTCCAA
NATCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTTTAGTTCTTTATGGTCTGAAA
AATGATCCATATAATTTCAATTTTTCACCTTGTCAGTATGAGGAATGTCC
CATGTATGCTTTTTAGGTGCAGTGACGCCGTATCTACTGATTTTTAAAAG
ATTTATTTATTTATTTTATGTATATGAGTACACTGTGGCTGTCTTCAGAC
ACACCAAAAGATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGT
TGCTGGGAATTGAACTCAGGATCTCTGGAAGAGCAGCAGTGCTCTTAACC
GCTGAGCCATCTCTCTTTTTTTGTACCCCCCGCCCTTTTGTGGGTTCATT
TTGCACCCTGCTACTTTGATGACAGCGTTTATTGAGGAGAACCCCTTGGA
TGTCCAGGCAGGGCAGCAAACCTCAAAGAGGTGAGAATGGCTTGGTTTAC
ACATGGAACGTCTGATGACAGGGGGTTCATTGTCACCATATTTAATACCC
AGTACAATTTGGAAAAAGTTTCCAGGCTCAATCAGCCCAATCTGTCCAAC
TTCAGGTGTACAGCGAAGCTTAAGGTAGATAAACACTCCCTTACAAATAA
CACGTGACCTTGCGAGGTAGGTTCTACCTATAAAAGTGCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_l24.g1 MSMg01no090_l24.g1 CHROMAT_FILE:
MSMg01no090_l24.g1 PHD_FILE: MSMg01no090_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:00 2005
         (255 letters)



>mm_chr11_5711325_5711979
          Length = 655

 Score =  470 bits (243), Expect = e-137
 Identities = 252/255 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtttagttctttatggtctgaaaaatgatccatataatttcaatttttcaccttgtca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 315 tggtttagttctttatggtctgaaaaatgatccatataatttcaattttttagcttgtca 256

                                                                       
Query: 61  gtatgaggaatgtcccatgtatgctttttaggtgcagtgacgccgtatctactgattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtatgaggaatgtcccatgtatgctttttaggtgcagtgacgccgtatctactgattttt 196

                                                                       
Query: 121 aaaagatttatttatttattttatgtatatgagtacactgtggctgtcttcagacacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaagatttatttatttattttatgtatatgagtacactgtggctgtcttcagacacacc 136

                                                                       
Query: 181 aaaagatcagatcccattacagatggttgtgagccaccatgtggttgctgggaattgaac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agaagatcagatcccattacagatggttgtgagccaccatgtggttgctgggaattgaac 76

                          
Query: 241 tcaggatctctggaa 255
           |||||||||||||||
Sbjct: 75  tcaggatctctggaa 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)