BAC Information

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BAC

Clone NameMSMg01-091C19
Chromosome11 (Build37)
Map Location 6,894,404 - 6,894,829
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091C19.T7 (MSMg01no091_c19.b1)MSMg01-091C19.TJ (MSMg01no091_c19.g1)
ACCAG309202AG309203
length697699
length of high quality
(start - end)
426 (124 - 549)499 (73 - 571)
definitionCHROMAT_FILE: MSMg01no091_c19.b1 PHD_FILE: MSMg01no091_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:35 2005CHROMAT_FILE: MSMg01no091_c19.g1 PHD_FILE: MSMg01no091_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
ATCCTGTCTTTCGAGACTGTATGTCCTGGACTATAAATAAAGAAGGGCCT
TGGAAGCTTGGTCATCGCTCGGCTCACGTGGGGGAAGTTAGGCTCTAAGA
ACTACAGTGATGTGACTGAATAATGTTCTGTGAGATGCAGCTTCTCCCTG
CCAGAATGAGTGAGAAACGTGGAATGTACAAAATAGGGATTTTCAAACAA
ACAGTGGTGCTGAGTCTGACTTAGAAAAGACAGAGGAGTGGCATCCATCC
TAGCGGCAAGGACAGAGCTGTGTGTGCTGCACTCTTACTGAAATTAGCGA
CAAGAGAGATAAAAGAGGGCCAAAGCAAACACCTAGAGGTGACAGAGAGG
ACAAAGGGTGCAACACAGGCCACAAGGGAGGAGATGGCTTATAAATAGCA
GGTCTAAAAGCTCATTGATGGAGTGAAGTGCAGACACACACTGTGGAGAA
GCAAAACAGCCACATAAATAAAGTCCGAGGAGCTTTTCTAGATGCTGAGC
CAAAGAGAAAGGGTAAAGGGACGATGCTGAAAGCCCGGCATAGCACAAAG
TGTCAAAACAAACATTCACGCTATTTAAAGACACCCAAGGAAAACATTTC
CGTGCCTCAAAATGCACGCACCTGTTCCGTGGGGAAAGGAACGTGTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGATTTTAAAAATCCCTAGGAATAAAG
AAAGGGAAGCTTGTTCGACTCACCAAAAGCCTCCACAGAACCCCCACTGG
TAAGATGATTCTTAATCATGAAAAAATGCAGAGCACCTCCCTGGAAACAG
CACAGGACAAGAATGCCATTCTTACACTTGTGCCTGACATTTTATCGGAA
GCTCAAGCTGGCAAAATAAGCCAAGAAAATGAAAATATAAGATCTCCCCA
TGGGAAAGAAAGAAACTAAGCCAAATTCATGTGCAAAAGTGATTGTCTAG
GTGGACAGCCCAGTGGAAATTTCAAAACTGTAGAAAGAAATCTGTTTATT
GCAAGTTTCAAAGCATCAATATATAAACATAATTTATATTTTGCTCTGTA
AGTAAAAAATAAACAATTATAAGTTAAAATTTAAAAATCAACCGAACTAT
GCTATCAAAAGTAAGATCTACTTATGGACATATCTGAAGGAAAGTCTGAA
ACATGAAAAAGAAAAAAAAAATTGACACATTTGGATGTTGAAAAATCATA
CTTTTCTGAAGGAAAATTAAACAAGTTGTATCATAGAGAGATGAAGATGC
TGTGAAGAGAGAGCTGACCTATGCTGTGAATCAGCTGTCTACAGCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_c19.b1 MSMg01no091_c19.b1 CHROMAT_FILE:
MSMg01no091_c19.b1 PHD_FILE: MSMg01no091_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:35 2005
         (426 letters)



>mm_chr11_6894204_6895029
          Length = 826

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgtgggggaagttaggctctaagaactacagtgatgtgactgaataatgttctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcacgtgggggaagttaggctctaagaactacagtgatgtgactgaataattttctgtga 260

                                                                       
Query: 61  gatgcagcttctccctgccagaatgagtgagaaacgtggaatgtacaaaatagggatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgcagcttctccctgccagaatgagtgagaaacgtggaatgtacaaaatagggatttt 320

                                                                       
Query: 121 caaacaaacagtggtgctgagtctgacttagaaaagacagaggagtggcatccatcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaacagtggtgctgagtctgacttagaaaagacagaggagtggcatccatcctag 380

                                                                       
Query: 181 cggcaaggacagagctgtgtgtgctgcactcttactgaaattagcgacaagagagataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcaaggacagagctgtgtgtgctgcactcttactgaaattagcgacaagagagataaa 440

                                                                       
Query: 241 agagggccaaagcaaacacctagaggtgacagagaggacaaagggtgcaacacaggccac 300
           || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 441 agggggccaaagcaaacacctagaggtgacagagaggacaaagggtgcaagaaaggccac 500

                                                                       
Query: 301 aagggaggagatggcttataaatagcaggtctaaaagctcattgatggagtgaagtgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggaggagatggcttataaatagcaggtctaaaagctcattgatggagtgaagtgcag 560

                                                                       
Query: 361 acacacactgtggagaagcaaaacagccacataaataaagtccgaggagcttttctagat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 acacacactgtggagaagcaaaacagtcacataaataaagtccgaggagcttttctagat 620

                 
Query: 421 gctgag 426
           ||||||
Sbjct: 621 gctgag 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)