BAC Information

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BAC

Clone NameMSMg01-091G01
Chromosome11 (Build37)
Map Location 5,573,389 - 5,573,784
singlet/doubletsinglet
Overlap geneAnkrd36
Upstream geneAscc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, LOC665181
Downstream geneMrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091G01.T7 (MSMg01no091_g01.b1)MSMg01-091G01.TJ (MSMg01no091_g01.g1)
ACCAG309345AG309346
length691695
length of high quality
(start - end)
446 (41 - 486)394 (73 - 466)
definitionCHROMAT_FILE: MSMg01no091_g01.b1 PHD_FILE: MSMg01no091_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:52 2005CHROMAT_FILE: MSMg01no091_g01.g1 PHD_FILE: MSMg01no091_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTTTTTTCCTTTCTTTAANATCTATTTATTTATTTAATGTATGTGAG
TACACTGTCGCTGTCTTCTGACACACCAGAAGAGGGCATTGGATCCCATT
ACGGATGGTTGTGAGCCACCATGTAGTTGCTGGGATTTGAACTCAGGACC
TCTGGAAGAGCAGCCAGTGCTCCTAACCGCTGAGCCATCTCTCCAGCCCC
CCACTTCTTTCTTTCTTGAGACAGGATCTCACTGCGCAGTCCTGACTGGG
TCTGTAACTTGCTATTTAGATCACCAGTCTGACCTCAGATTCACAAGAAC
CACTTCCTCTGCCTGGGTGCTGGGCTTAGAGGTGTGTGCCACCATATCCA
GCAAAGGGATTCGTTCACCAAAGGTCTAAAGTCCCGAATCGAATTTCCTT
AGCATCTATAGGATGATGCTAGTTTTATCTTCTTGGGTATTGATAGTCTG
TGGCTTCTAAAGCCATGGGTCTGTTTTTGTTAAAAGTGCTCATGCATGTA
GAGCGTTAATGCTTTTGGCTTTCCGTGGCTGCGGTTGGTCTGCCCATCTC
TCTTTTCCAGGTTGGTGAGTGTCTTTGTCCTCTCCCAGTCTCCCTGGTTT
TCTTTCCTTCCTGGCTTTTCCTCCCTTTGGTTATTCCACCG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGGGAATGGTGGTGAGTACCTTTAAT
CCCAGCACTCAGGACTCAGACCCAGGCGGATCTCTGAGTTCAAAGTCACA
CTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATGCAGAGAAACCCTGT
ATCTGGAAAAAAAGATTTTACTGAACAAGATTCCTATAAAATGAATGATT
TATAATCTTATAATTAATCATATCTTTGATATATAATGCTTTGTAAGATA
ACATTTTGTTTTCCCATTAGTTGATTAATAGACATGTGGAGTGATTGGAT
ATTGTAAGTAGGGTTGCTGTGTAGGCGGCATGCAGTTGTCTATGTCACAG
GGAAAATCTTAGTATTCTAAGAACATTCTAGCTATTTGGTCTAGAGTTCT
AAATCTGTTCCCAGAAGCCTTCAGTGAAGTTTTGAGAATGAATGGCTTTG
TTACTTCCATTTCTAATCAATAACAGATATACTTTGGGGCTAGAAAGAGG
ACTCAGAGAGTATTTGCTGCTATTACAGAGGACCCAGGTTTAGTTCCCAG
CAACCACATAGTGTTTCACAACCATTCCAAAATTCCGGCTTTAAGGGATC
TCTGACATCCTCCTCTGGCCCCCCTAAACCCCTGCACTCCTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_g01.g1 MSMg01no091_g01.g1 CHROMAT_FILE:
MSMg01no091_g01.g1 PHD_FILE: MSMg01no091_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:52 2005
         (394 letters)



>mm_chr11_5573191_5573984
          Length = 794

 Score =  654 bits (338), Expect = 0.0
 Identities = 382/398 (95%), Gaps = 6/398 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggaatggtggtgagtacctttaatcccagcactcaggactcagacccaggcggatc 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||
Sbjct: 199 actgggaatggtggtgagtacctttaatcccagcactcaggaggcagaggcaggcggatc 258

                                                                       
Query: 61  tctgagttcaaagtca-cact---ctacagagtgagttccaggacagccagagctatgca 116
           ||||||||||||| || | ||   ||||||||||||||||||||||||| ||||||||||
Sbjct: 259 tctgagttcaaagccagc-ctggtctacagagtgagttccaggacagccggagctatgca 317

                                                                       
Query: 117 gagaaaccctgtatctggaaaaaaagattttactgaacaagattcctataaaatgaatga 176
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 318 gagaaaccctgtatctggaaaaaa-gattttactgaacaagattcctataaaacgaatga 376

                                                                       
Query: 177 tttataatcttataattaatcatatctttgatatataatgctttgtaagataacattttg 236
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttataatcttataattattcatatctttgatatataatgctttgtaagataacattttg 436

                                                                       
Query: 237 ttttcccattagttgattaatagacatgtggagtgattggatattgtaagtagggttgct 296
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttttcacattagttgattaatagacatgtggagtgattggatattgtaagtagggttgct 496

                                                                       
Query: 297 gtgtaggcggcatgcagttgtctatgtcacagggaaaatcttagtattctaagaacattc 356
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 gtgtaggcggcatgcagttgtctatgtcacagggaaagtcttagtattctaagaacattc 556

                                                 
Query: 357 tagctatttggtctagagttctaaatctgttcccagaa 394
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagctatttggtctagagttctaaatctgttcccagaa 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)