BAC Information

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BAC

Clone NameMSMg01-091O13
Chromosome11 (Build37)
Map Location 108,379,321 - 108,379,559
singlet/doubletsinglet
Overlap geneCcdc46
Upstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381
Downstream geneOlfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091O13.T7 (MSMg01no091_o13.b1)MSMg01-091O13.TJ (MSMg01no091_o13.g1)
ACCAG309729AG309730
length682687
length of high quality
(start - end)
509 (44 - 552)239 (129 - 367)
definitionCHROMAT_FILE: MSMg01no091_o13.b1 PHD_FILE: MSMg01no091_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:34 2005CHROMAT_FILE: MSMg01no091_o13.g1 PHD_FILE: MSMg01no091_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTTTATCTCTGTACCCCATTTTTAAATAGGATTATTTGGATTCC
TGGAGTCCAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCCCTA
TCTGATTTAGGATTGGTAAAGATCTTTTTCCAGTCTGTTGGTTGCCGTTT
TGTCTTACTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTAAAGCACAGGCCATTGCTGTTCTG
TTCAGGAATTTTCCCCACTGTGTCCATATCTTCGAGGCTCTTCCTCAATT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTGAAGTTTTATGTGAAGTTGCT
TGATCCACTTAGACTTGAGCTTTGTACAAGGAAATAAGAATGGATCGACT
GACATTCTTCTACATGCTAACAGCCAGTTGAGCCAGCACCACTTGTTGAA
AATGCTGTCTTCTTTCTACTGGATGGTTTTAGCTCCTTTGTCTAAGATCA
AGTGACAATAGGTGTGTGGGTTCGTTTCTGAGTCTTCAATTCTACTCCAT
TGATCTACCTGTCTGCCACTATACCAGTACCATGCAGTTTTTAATTCCGA
TTGCTCTGTAATACAGCCTTGAGGTCAGGCCT
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAATAACTTAAATACCAAATAAAAA
GAGGCAATTTATTTGAATGTATGCTCCTGCATACTTTAGAAAAATAGAAA
ACTCCTTTAAATTAAATAGAAAAAATCTAACAGTTAACCAAATAAGAATT
TATGTGATAAAATATTCCTATATACTTTCTAATGACGAATATGTTATGTG
GTACTCCTGGCATTAAAATGTGGAGTTATGGATTTCATTTTAAAGTATCC
TGATTAGAACCTTAAGTGAAAGGGACAAAGCTGAACTACAATGAGGAGGC
ACAGAGGGATTGCCATTGACCTGAGGCGAGCGCTGGCCTTCTTTACTCTC
ATGGGAACATTTCAGACTCAGCAAACATTCCACAAATGAGTGAATTGTTG
GATAGATGTAAACATGCTATTAATTTTATGGTAAAAAGGTGATATTTCAT
TATACCAGGTGGTGGTGGCACATGACTTTAATCCCAGCACCTAGGAGGCC
GAGGTAGACAGATCTGAGTTCGAGGCCAGCCTGATCTATAAAGAGAGCTC
CAGGACAGCCAAGGCTACACAGAGAAATCCTATCTCAAACAAACCAACTA
CAACCACAAGCTACGTTAGAAATTTATGTTTTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_o13.g1 MSMg01no091_o13.g1 CHROMAT_FILE:
MSMg01no091_o13.g1 PHD_FILE: MSMg01no091_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:34 2005
         (239 letters)



>mm_chr11_108379121_108379760
          Length = 640

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatactttagaaaaatagaaaactcctttaaattaaatagaaaaaa-tctaacagttaa 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gcatactttagaaaaatagaaaactcctttaaattaaatagaaaaaaatctaacagttaa 260

                                                                       
Query: 60  ccaaataagaatttatgtgataaaatattcctatatactttctaatgacgaatatgttat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaataagaatttatgtgataaaatattcctatatactttctaatgacgaatatgttat 320

                                                                       
Query: 120 gtggtactcctggcattaaaatgtggagttatggatttcattttaaagtatcctgattag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtactcctggcattaaaatgtggagttatggatttcattttaaagtatcctgattag 380

                                                                      
Query: 180 aaccttaagtgaaagggacaaagctgaactacaatgaggaggcacagagggattgccat 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aaccttaagtgaaagggacaaagctgaactacaatgaggaggcacagagggattaccat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)