Query= MSMg01no094_f07.b1 MSMg01no094_f07.b1 CHROMAT_FILE:
MSMg01no094_f07.b1 PHD_FILE: MSMg01no094_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
(545 letters)
>mm_chr11_12626671_12627615
Length = 945
Score = 899 bits (465), Expect = 0.0
Identities = 525/553 (94%), Gaps = 14/553 (2%)
Strand = Plus / Plus
Query: 7 gaattcatcagtggattagaccattgatttgatcagaaaccttcttagcttactttcact 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatcagtggattagaccattgatttgatcagaaaccttcttagcttactttcact 266
Query: 67 aaaaacataatcacaaacacactcaggagtgtttttggatgtctctcagtcccatcaaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaaacataatcacaaacacactcaggagtgtttttggatgtctctcagtcccatcaaat 326
Query: 127 taacaaccaaagcaagatgtgacatcaa-------gaagtccctagtgaaacccagaatc 179
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 taacaaccaaagcatgatgtgacatcaacaaatacgaagtccctagtgaaacccagaatc 386
Query: 180 catttatacaaagcactgggaat-------taactcagaatatattaccaatgtcttatt 232
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 387 catttatacaaagcactaggaatatttaattaactcagaatatattaccaatgtcttatt 446
Query: 233 ttctgtattatgaagctttgttatctaaggccctgacgacaaggaagggattggctttcc 292
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 ttctgtattacgaagctttgttatccaaggccctgacgacaaggaagggattggctttcc 506
Query: 293 aaagattagtcacttcttagtattggtgaatagcttagtcatgagaatactttacaagtg 352
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 507 aaagattagtcacttcttagtattggtgaataccttagtcatgagaatactttacaagcg 566
Query: 353 aatgccaactatgatgaactcaaatgtgtgtgtgcgtccacgttagattcatatgtagaa 412
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 567 aatgccaactatgatgaactcaaatgtgtgtgtgcgtccacactagattcatatgtagaa 626
Query: 413 ggtctaatcttaaatgagatggtgttcaaagttgtatcatgtaggaggtgagttggatgt 472
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggtctaatcttcaatgaggtggtgttcaaagttgtatcatgtaggaggtgagttggatgt 686
Query: 473 gaggatagagcttgatgatggtattagcgtctctaagaagagcacttgcatagctctctc 532
|||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 687 gaggatggagcttgatgatgatattagtatctctaagaagagcacttgcatagctctctc 746
Query: 533 tgctcctcactat 545
|||||||||||||
Sbjct: 747 tgctcctcactat 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_f07.g1 MSMg01no094_f07.g1 CHROMAT_FILE:
MSMg01no094_f07.g1 PHD_FILE: MSMg01no094_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
(521 letters)
>mm_chr11_12755757_12756676
Length = 920
Score = 727 bits (376), Expect = 0.0
Identities = 400/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 1 cttgagtatttttatagagatgaaaaggtaaataacagaagtagcaaatgaaatagaata 60
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 407 cttgagaatttttatagagatgaaaaagtaaataacagaagtagcaaatgaaatagaata 348
Query: 61 agcttagatatagaaagaaatttattatttaagtttataattgtaagtaattttaggtac 120
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 347 agcttaaatatagaaagaaatttattatttaag-ttataattgtaagtaattttaggtac 289
Query: 121 atcaataaaatgaattatgaaaataaataaatgataggaaatccaataaaaagaatattt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 288 atcaataaaatgaattatgaaaataaataaatgataggaaatccgataaaaagaatattt 229
Query: 181 cctatatcagaggttttgatgaatactttgccaaggatcagccacagcttggagagggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cctatatcagaggttttgatgaatactttgccaaggatcagccacagcttggagagggac 169
Query: 241 tctgaggaaggggtgtccaggagtggcaaaaggaggacttgatatcaaatcatggctgtt 300
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 168 tctgaggaaggggtatccaggagtggcaaaaggaggatttgatatcaaatcatggctgtt 109
Query: 301 tgcttctcaagacagattggtgaagatcaccagacagctcaacgctcatagatcaaagcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 108 tgcttctcaagacagattggtgaagatcaccagacagctcaacgctcatagaccaaagcc 49
Query: 361 cagacttttatttatatatcagttcaatcattcaccccaggatcactt 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 cagacttttatttatatatcagttcaatcattcaccccaggatcactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
