BAC Information

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BAC

Clone NameMSMg01-094H17
Chromosome11 (Build37)
Map Location 47,965,609 - 47,965,944
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H17.T7 (MSMg01no094_h17.b1)MSMg01-094H17.TJ (MSMg01no094_h17.g1)
ACCAG311640AG311641
length658666
length of high quality
(start - end)
317 (14 - 330)331 (55 - 385)
definitionCHROMAT_FILE: MSMg01no094_h17.b1 PHD_FILE: MSMg01no094_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:09 2005CHROMAT_FILE: MSMg01no094_h17.g1 PHD_FILE: MSMg01no094_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATACGGAGAGGATCCGCGGAATTCTCTCTTTAGCAGTGTACCC
CATTTTTAATTGGATTATTTAGTTTGTTGATATCTAACTTAGAGGCCCGT
TTTTTTTTGTTTTTGTTTTTTTTTTAAAAATTTTGGATATTTTACCTCTG
TCAGATGTAAGGTTGGTGAAGATCATTTCCCAGTCTATAGGTTATGATTT
TGTCTTATTGATGGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTCCATGA
GGTCTCATTTTTCACTTGTTGATCTCAGAGCCCGAGTCACTGGTATTCTA
TTCAGTAAGTTGCCTCCTGTACCAATGAGTCTTTTTTTATCCTCCACCCT
CCGCTCTATTAGATTTAGTCTATCCAGTTTTACACATTAACGCCTTTTAT
CTACTTTTTGTGTAGGTCATGGCTATGGATCTGTTTGTATTCTACATGCA
GGTGTCCAGTTAGACCAGATACATTTGTTGAAAAGATGATTTCTTTTTTT
CATTATCAAGTTTTGCCTCCTTTGTCAAAAAAGAACTGTTCATAGGTGTT
TGGGCTTATTTCAGTCTTATATCTAATTCCATATAGCTGTCTGGTCCTAT
ATCATTACTCATGCAGATTTTGCTACTATTGCTCTGAACAAAAGCTCGAG
AACAGCGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCTTCTTGTGTCTTCCTGAGTCTGACTCAGATAAGCAAATGCTTA
CCGCTTGCGCCTGCCCTTTGCCCCGGCCTCTCTTCATGCTTTGATTTTTA
TCACTGCTTCAGAGCTTCAGCCCTGATTCAAGTAAAGACAAGGGCTCACA
GTTTTCAGATTTTTGTGCTATTGCAGTAAGAAGTAAGAGGGTTTTTTTTT
GTTTGTTTGTTTTGTTTTTTTGCCTGCAGACTGAAGTCCAGCGGAGCTTC
TATTCTGCATATTAATATCTATCATCAGTTTCAGAAAATCTGCATCCGTA
ATCTATATTTCAATATTTCTTTGGCCTCATCTAATAAAAAATAAACGCTC
TCATTATATTGCACTTGGAGACACGATCTTGCTACATAGACGGTATAAGA
AGCTTTCCTGGAACTCACTATGTGTTCTAGTCTGGTTCTGAACTATGGTA
ATACTCCCACCTTAGACACTGGAGTACTATACTTTAGAGGCTTGGCGTAC
CATACCTAGTGCTCACTCTAGTCCCCGTCTCTCTTCCCTTCTTAAGCGCC
TATGCTGTACCATTCGAACTAACATCTTCCTACCTTTCAGGGAACCTATT
TCTACCCTTGTAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h17.g1 MSMg01no094_h17.g1 CHROMAT_FILE:
MSMg01no094_h17.g1 PHD_FILE: MSMg01no094_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:09 2005
         (331 letters)



>mm_chr11_47965409_47966144
          Length = 736

 Score =  524 bits (271), Expect = e-153
 Identities = 319/339 (94%), Gaps = 11/339 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttcttg-tgtcttcctgagtctgactcagataagcaaatgcttaccgcttgcgcctg 59
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 536 ttcttcttgctgtcttcctgagtctgactcagataagcaaatgcttactgcttgcgcctg 477

                                                                       
Query: 60  ccctttgccccggcctctcttcatgctttgatttttatcactgcttcagagcttcagccc 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 476 ccctttgccccggcctctcttcatgctttgatttttatcactgcatcagagcttcagccc 417

                                                                       
Query: 120 t--gattcaagtaaagacaagggctcacagttttcagatttttgtgctattgcagtaaga 177
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctgattcaagtaaagacaagggctcacagttttcagatttttgtgctattgcagtaaga 357

                                                                       
Query: 178 agtaagag-----ggtttttttttgtttgtttgttttgtttttttgcctgcagactgaag 232
           ||||||||     || ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 356 agtaagagaagaggggttttttttgtttgcttgttttgtttttt-gcctgcagactgaag 298

                                                                       
Query: 233 tccagcggagcttctattctgcatattaatatctatcatcagtttcagaaaatctgcatc 292
           ||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tccagtgaagcttcaattctgtatattaatatctatcatcagtttcagaaaatctgcatc 238

                                                  
Query: 293 cgtaatctatatttcaatatttctttggcctcatctaat 331
            |||||||||  |||||||||||||||||||||||||||
Sbjct: 237 tgtaatctat--ttcaatatttctttggcctcatctaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 736
Length adjustment: 9
Effective length of query: 322
Effective length of database: 727
Effective search space:   234094
Effective search space used:   234094
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)