BAC Information

Click to search

BAC

Clone NameMSMg01-095C14
Chromosome11 (Build37)
Map Location 74,830,314 - 74,830,933
singlet/doubletsinglet
Overlap geneSmg6
Upstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478
Downstream geneLOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C14.T7 (MSMg01no095_c14.b1)MSMg01-095C14.TJ (MSMg01no095_c14.g1)
ACCAG312141AG312142
length705703
length of high quality
(start - end)
625 (43 - 667)291 (65 - 355)
definitionCHROMAT_FILE: MSMg01no095_c14.b1 PHD_FILE: MSMg01no095_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:05 2005CHROMAT_FILE: MSMg01no095_c14.g1 PHD_FILE: MSMg01no095_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCACATCTACATCTGCCTCAATTTGGCCTGCCCAACAAGCAAATCAAG
GCCAAAGCTCAAAGTGCCATAGACTTCCCAAGAGCCAGTTTGGCTATGTT
TCCTATAGAGATCTAAAAACCTGTTGAGGTTCCAAAAGTCGCCACCAATT
TTCAAATGTGATCAGGATCTCTGAAAGTCACAGTTACCATACAGCTGAGT
AAAATATTTTTCATAAATTTAACGCCAGCATGTCTGTGTTTGGAAACTTT
GAAAATACATGTTGTATGGTTTACTGCACTGGAAAAGGTGCCAAACAGTT
TCAAAGGAGGGGAAGTGTATAACTGTTTCCTTTCAAATGCATTTTCCAAT
GGGATCCATTCAGGGAAAAGGCTGGAACTAACTAAAACATTATTAAAAAC
TGTTATGGAAAGAGACAGAGAGATGGAAAAAGATAAACCCCCAAAAGTAA
AATATATAACCAAGGAGAAGACAAGCAATCGAGGAGAAAGAAAGGGGACC
TAGGCAGAAAGACATGTCGGAGAGGGAATGGAGTGAGATGGAGTTTCGTC
TGGCAGTTGCTGTTCGTGGTTTCATATTGTTGAGGATCAATCGATCAGGA
CTACAGCGCTGCTGGTCCAGTGGCTTAAGACAAACCACAGAATTGGCTTC
AAGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAA
GGCGTGCGCCACTACGCCCAGCTCCTAAATTTTTAAAAAAATTTTTAAGG
ATTGTTTTATTTTATGTGCATTGGTGTTTTGCCTACATGTAAGTCTGTGT
GAGGGTGTCAGATCACCTGGAACTGGAGTTAAAGAAAGTTGTGAGCTGCC
ATGTGGGTGCTGGGAATTGAACCCAGGTCCTCTAGGAAGAGCAGCCAATA
CTCTAGCTTTTGAGCCATCTCTCCTACAGCAACCCTAAACTGGTTTTTTT
TTTCCCACCCCCCGCCACCTCAGATCCTAAATGTGCTGTGGCAGATTTTT
AATCTGAAAAATGAAACACGTATCCTGCGGCGGGCTACTTAAGGCATGTG
ACCTTGTGTGGGGTACGTGAGTGAATGTGATATGTTGTTTCAATTTTTAT
TTTAATTATATATTTTGTATTTATCTTTTTTTACCTCTATACTCTTATTG
TTTCGCTTTTTTCAAATATCTCTACCCCCTATTTTTTTATTCATCCACCT
ACTTATCAATTTTATATCCTCTACCCCCCACTACTTATTTCTCAAACCAT
TTAACTTTTATCTATCTACTCTTTTTTTTTTTTAATATTTTTCTTTCTTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c14.b1 MSMg01no095_c14.b1 CHROMAT_FILE:
MSMg01no095_c14.b1 PHD_FILE: MSMg01no095_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:05 2005
         (625 letters)



>mm_chr11_74830110_74831135
          Length = 1026

 Score = 1183 bits (612), Expect = 0.0
 Identities = 618/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccacatctacatctgcctcaatttggcctgcccaacaagcaaatcaaggccaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gaattcccacatctacatctgcctcaatttggcctgcccaacaagcaaatcaaggccaaa 765

                                                                       
Query: 65  gctcaaagtgccatagacttcccaagagccagtttggctatgtttcctatagagatctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gctcaaagtgccatagacttcccaagagccagtttggctatgtttcctatagagatctaa 705

                                                                       
Query: 125 aaacctgttgaggttccaaaagtcgccaccaattttcaaatgtgatcaggatctctgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaacctgttgaggttccaaaagtcgccaccaattttcaaatgtgatcaggatctctgaaa 645

                                                                       
Query: 185 gtcacagttaccatacagctgagtaaaatatttttcataaatttaacgccagcatgtctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtcacagttaccatacagctgagtaaaatatttttcataaatttaacgccagcatgtctg 585

                                                                       
Query: 245 tgtttggaaactttgaaaatacatgttgtatggtttactgcactggaaaaggtgccaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtttggaaactttgaaaatacatgttgtatggtttactgcactggaaaaggtgccaaac 525

                                                                       
Query: 305 agtttcaaaggaggggaagtgtataactgtttcctttcaaatgcattttccaatgggatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agtttcaaaggaggggaagtgtataactgtttcctttcaaatgcattttccaatgggatc 465

                                                                       
Query: 365 cattcagggaaaaggctggaactaactaaaacattattaaaaactgttatggaaagagac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cattcagggaaaaggctggaactaactaaaacattattaaaaactgttatggaaagagac 405

                                                                       
Query: 425 agagagatggaaaaagataaacccccaaaagtaaaatatataaccaaggagaagacaagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agagagatggaaaaagataaacccccaaaagtaaaatatataaccaaggagaagacaagc 345

                                                                       
Query: 485 aatcgaggagaaagaaaggggacctaggcagaaagacatgtcggaga-gggaatggagtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 344 aatcgaggagaaagaaaggggacctaggcagaaagacatgtcggagaagggaatggagtg 285

                                                                       
Query: 544 agatggagtttcgtctggcagttgctgttcgtggtttcatattgttgaggatcaatcgat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agatggagtttcgtctggcagttgctgttcgtggtttcatattgttgaggatcaatcgat 225

                               
Query: 604 caggactacagcgctgctgg 623
           ||||||||||| ||||||||
Sbjct: 224 caggactacagtgctgctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space:   624840
Effective search space used:   624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)