BAC Information

Click to search

BAC

Clone NameMSMg01-095C18
Chromosome11 (Build37)
Map Location 101,848,719 - 101,849,303
singlet/doubletsinglet
Overlap gene1700006E09Rik
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3
Downstream geneMpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C18.T7 (MSMg01no095_c18.b1)MSMg01-095C18.TJ (MSMg01no095_c18.g1)
ACCAG312149AG312150
length684702
length of high quality
(start - end)		589 (42 - 630)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no095_c18.b1 PHD_FILE: MSMg01no095_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:06 2005CHROMAT_FILE: MSMg01no095_c18.g1 PHD_FILE: MSMg01no095_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATTTTATAAACTCTTTAGTGCCAAAGTTAGAAAATAAGAGCTCAGTG
CCCAATAGACTCTCTAGGAATGTTACGAAGTGGATGGGGAAAAGATGCCA
TCGGATTGAAGGGAAGTTTGTCCTTATGGATTTTGAGAGAGGGGCTCACG
TAGTCCAGGGGGGCCAGGAGCTGGCTGAGGGTCAAAGATGACCTTGAACT
CCTAGCCCTCTGTCAGCTACTACCACTGGAGTTGCTGAATTATGGTCTGC
ACATCACCACTTGATTTAGGCAGTGCTGGGCACCAAACCCAGGGTCTCTG
GTGCGGTGAGTTGGCATTCTACCGGCCCTGTCCATCTTGATAGATTATCA
GCCCTTTGTCTTCTCTGTCCGAGTCCTCCAGAGATGGCAGGAGGGAAACA
TTAAACCTAGTTGAAGTTGCTAGGCTAGATCTCTGTCAAAATTCAAGTGC
GGGATGCTCAGTGGTTGGGGTCGGGTTGCCTGGTGGGTTTCTAAAGCTGC
CAGGACCCTACCGTGTAACAATGTTTTTCCCCTCTAGTGAAGCCTGCCGT
CGATACCAAACCTCCAATGGCACACACACATTACATTTTAAAATTGAGCA
AAATCCAGGTATTCTTGCCACCCGTGGCTGTATT

CGAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGGAGACCAGGCTAGCCTGGAA
CTTGGAGATTCATCTGCCTGTTTCCGAGTGCTGAGATTAATGGTGCGTGC
CACCACACCCAGCATTCATCCCGGGTTTTTTTTTTTTTTTTAAAGATTTA
TTTATTTTTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCA
GAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTT
GCCGGGATATGAACTCAGGACCTTCATAAGAGCAGTTACCTGTTGAGCCA
TCTCACCAGCCCCTTTTTCCCGCCTCCCCCCCCAGCATCTCACTCTGTAA
TCTAGCCTGCTCTCAAACTCCCGTTTCCCCACCCCCACTTCCTGGATGCC
GAGGTTACAGGCATGTCTCTATGACCCACTTAGTGTATGTTTTTGATTTC
TCCCTCCATCCCTCTTATGGCCCATTTTTTTTTTCCCTCTCTGCCAGTTT
GGGGGGCAGGTCTTTTGGAGAAATCTTTTGGAAGCCCAGCTGTAGTGAGA
ACTGACGTCTTATTACATTATAGGAAATGGAAGACTCAAAAAAGGTAAGC
AACTTGCCTTCAACCTCAGACCCACCCTTGCTAGAATTAACTGTCTAGTC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c18.b1 MSMg01no095_c18.b1 CHROMAT_FILE:
MSMg01no095_c18.b1 PHD_FILE: MSMg01no095_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:06 2005
         (589 letters)



>mm_chr11_101848515_101849503
          Length = 989

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaattttataaactctttagtgccaaagttagaaaataagagctcagtgcccaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaattttaaaaactctttagtgccaaagttagaaaataagagctcagtgcccaa 264

                                                                       
Query: 65  tagactctctaggaatgttacgaagtggatggggaaaagatgccatcggattgaagggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagactctctaggaatgttacgaagtggatggggaaaagatgccatcggattgaagggaa 324

                                                                       
Query: 125 gtttgtccttatggattttgagagaggggctcacgtagtccaggggggccaggagctggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttgtccttatggattttgagagaggggctcacgtagtccaggggggccaggagctggc 384

                                                                       
Query: 185 tgagggtcaaagatgaccttgaactcctagccctctgtcagctactaccactggagttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 tgagggtcaaagatgaccttgaactcctagccctctgtcagctactaccgctggagttgc 444

                                                                       
Query: 245 tgaattatggtctgcacatcaccacttgatttaggcagtgctgggcaccaaacccagggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaattatggtctgcacatcaccacttgatttaggcagtgctgggcaccaaacccagggt 504

                                                                       
Query: 305 ctctggtgcggtgagttggcattctaccggccctgtccatcttgatagattatcagccct 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctggtgcggtgagctggcattctaccggccctgtccatcttgatagattatcagccct 564

                                                                       
Query: 365 ttgtcttctctgtccgagtcctccagagatggcaggagggaaacattaaacctagttgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtcttctctgtccgagtcctccagagatggcaggagggaaacattaaacctagttgaa 624

                                                                       
Query: 425 gttgctaggctagatctctgtcaaaattcaagtgcgggatgctcagtggttggggtcggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgctaggctagatctctgtcaaaattcaagtgcgggatgctcagtggttggggtcggg 684

                                                                       
Query: 485 ttgcctggtgggtttctaaagctgccaggaccctaccgtgtaacaatgtttttcccctct 544
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 ttgcctggtgggtttctaaagctgccaggaccctaccatgtaacaatgtttttcccctct 744

                                                        
Query: 545 agtgaagcctgccgtcgataccaaacctccaatggcacacacaca 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agtgaagcctgccgtcgataccaaacctccaatggcacacacaca 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |