BAC Information

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BAC

Clone NameMSMg01-095H22
Chromosome11 (Build37)
Map Location 107,957,419 - 107,957,718
singlet/doubletsinglet
Overlap genePrkca
Upstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H22.T7 (MSMg01no095_h22.b1)MSMg01-095H22.TJ (MSMg01no095_h22.g1)
ACCAG312394AG312395
length665934
length of high quality
(start - end)
314 (5 - 318)---
definitionCHROMAT_FILE: MSMg01no095_h22.b1 PHD_FILE: MSMg01no095_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:32 2005CHROMAT_FILE: MSMg01no095_h22.g1 PHD_FILE: MSMg01no095_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTCTTTTTGACTCTTTACTAATTTATTTACTGGCG
TCTTTAGGGATTTCTATGAGTGCCTCCTAGACTTTAACATCATTCTTTCC
TGGTTTTCCCTCAACTTTATTTAACCCTTTCATCTTACTGATGAATGTCT
AAAATATACATTATTCCTTCATGTTGCTGACAAGTTTATTGAAAATATTA
TTTATTGAATTATCTTTTCTCTTCTTTTCTTTTCTTTTTTCTTTTTTTTT
TTTTTTTAGACAGGATTTCTCTGCCTGCTCTGGCTGTCTTGGAACTTACT
CTGTAGACCAGGCTGGTCTTTTTCTCTCACACCCCCCTGCCTCTGGTTTC
TTTGGGATGGTTTTGGTTACTCTAAATGCAAAAAAAATAAATTCTGCCCG
GAATTTTAATGAATTATGTTTATTCCCATTGAAATAGATTTTATGAAAAT
AATAAATTTACAGATTTTCCCTCTTAATAAGGTGATATATGTTATAGACC
TGGACTACACAGACATAAAAATCTAACCCTTACCCCCACTACTGATTCTT
ATACACTGATGAATTTCCGTGTGTGTGTTTTTGTGCCTTTTTGCTTCCTA
TCTCTACATACTCTCCTTAATTCCTTTAATGCCCCCACATTTTTAATCTC
CCCCTATTTTTTTCC
TTTTTTTTTTTTNTTTNNNNNTNTTTTTTTCTTTTTCTTTTTTANTTTTC
CCCTTTTTTTTTTAAGTTTTTAAGAAANTTCTAAAAGAANNNNNCCNNTT
CNTAAAGATTTGGGGGGNNNNNNCCTTTTTCTTAAAAATTGAAAAAAAGA
NNNNNNNNNNTNTTTNNTTTTTNNTTTTTTTTTTTTTTTAAAAAGGAAGA
GGGTGGTTTTTTNNTTTANTNTTTTTTTTTTTNTTTGGGTTGGGTGGTGT
TAATATGTTTGNATTTTTTTTTTTTTTTCTTCCCTCNAAAAAAAAAAAAA
GGGGGTGGNNNTTTTTTTTTTTTATTTTTTTTTTATTATTTTTTTTATAA
TATTATATAAATATATATTTATATTATTTATATTTAATTAATAATATATA
ATATAATATTTATTTTTTTATTTTTATAGATATTTTTTATATTATTTAAT
AAATATTTATTTTTTTTTTTTTCCACCCACCCAATGTTATTATTATTTTA
TTTATTATATTTTATTATATTTTTTTCTTTCATAAAAAAAAAAAAAAAAA
AATTATTGGGGGGGGGTGGGGGGTAATATTTTAATTTTATTATATTTTTA
ATATTATTTTATTTTTTATATTTATATAATTATTTAAATATTTTTTTTTA
ATTTTATTATATTGTTTTTTTATAACATATAATTTTTTTTTTATTAATTA
CTTATTATTTTTTATTTTATTAAGTTTTTTTTTCTTTATTTTTTTACTTT
ATTATTTTATATTATTAATTATGTTTTGTTTCTATTATTATTTTTTTTAG
TTATATTTTTTTATTATTATGTTATTTTGAGCTAGTTAGATTATGTTTAT
TTTTATTATTTTTTTTTAATATTTTTATTGGAAGGATAATATTTTGNTTT
TTTATTGTTTTATTTTTTTTTTATGTTTTATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h22.b1 MSMg01no095_h22.b1 CHROMAT_FILE:
MSMg01no095_h22.b1 PHD_FILE: MSMg01no095_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:32 2005
         (314 letters)



>mm_chr11_107957213_107957927
          Length = 715

 Score =  536 bits (277), Expect = e-157
 Identities = 297/307 (96%), Gaps = 8/307 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctttttgact-ctttactaatttatttactggcgtctttagggatttctatga 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctttttgaattctttactaatttatttactggcgtctttagggatttctatga 266

                                                                       
Query: 66  gtgcctcctagactttaacatcattctttcctggttttccctcaactttatttaaccctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgcctcctagactttaacatcattctttcctggttttccctcaactttatttaaccctt 326

                                                                       
Query: 126 tcatcttactgatgaatgtctaaaatatacattattccttcatgttgctgacaagtttat 185
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 327 tcatcttactgatgaatgtctaaaatataccttattccttcatgttgctgacaagtttat 386

                                                                       
Query: 186 tgaaaatattatttattgaattatcttttctcttcttttcttttcttttttctttttttt 245
           |||||||||||||||||||||||||||||||||||||||      |||||| ||||||||
Sbjct: 387 tgaaaatattatttattgaattatcttttctcttctttt------tttttt-tttttttt 439

                                                                       
Query: 246 ttttttttagacaggatttctctgcctgctctggctgtcttggaacttactctgtagacc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttttttagacaggatttctctgcctgctctggctgtcttggaacttactctgtagacc 499

                  
Query: 306 aggctgg 312
           |||||||
Sbjct: 500 aggctgg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)