BAC Information

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BAC

Clone NameMSMg01-096O20
Chromosome11 (Build37)
Map Location 10,417,246 - 10,417,645
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca13, LOC665435, LOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096O20.T7 (MSMg01no096_o20.b1)MSMg01-096O20.TJ (MSMg01no096_o20.g1)
ACCAG313487AG313488
length764765
length of high quality
(start - end)
456 (131 - 586)400 (127 - 526)
definitionCHROMAT_FILE: MSMg01no096_o20.b1 PHD_FILE: MSMg01no096_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:28 2005CHROMAT_FILE: MSMg01no096_o20.g1 PHD_FILE: MSMg01no096_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTTTTTTTTTTTTTCTTCTTTTTTTCTCTCTTCTCNNCCTCCCCAC
CCGCCCCCATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ACCGCGGAATTCTTTTATGTTTCCACGATGGCGCATCTCTCAATCCCTAT
GACAGACACTGCTATTTGAAATAGATGGTGATTAACACAGACATCCATAA
CTAGCCAAAGAACAAAGAATAAATGACTTCAATTCTCAGGCATAAATAAA
ACACCTGTGTTACGACTGCTTCTTCCAAGGCTCAGGGATCATTGTGGAAA
TGGGTGAGGAAGATTCAAAGAGCCACAAGTGGTGGATAAGAGCCCAGAAA
CAATGTCTTCCAGACAGAACAGGGCACAAACTCACCTATTATGACAGCGT
GCAAGCTCATTCATTTTATTAAATTGCACACTACTTCAGGTGATTTGGCT
ATTATTTTAACTATATCTATTATATTCACCTATTTAACTAACAAACTTTT
ATCACCTAGTTACTGAAAATAGAGTCATTGTAAGTGAATACATAGCTGAT
ATATATATGTATATCAGCTGATATACACACACACACACACTCACACTCTC
ACACACATATATATATATACCTATATATATATATATATATATATATCATC
AACCTATATTATCACAGCTTTTTAAATGACAGACTGTTAACTGGTCTCTG
CCATAAGGTTTTTTTAACTACTCTGTACTATTTAAAATAGCAATACCTTT
TCTCCCTCCCCTCG
CCCTTTTTTTTTCTTTCCTTTCTTTCTGCCCCCGCCCCCCCCACTCCTCT
TCCTCGATGATATGNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAGCTCAAAGGTTTGCTGAG
GGCAGACAAATAAATCTAGCTTGGAATTGCTTGTTTATTTAATGGTCTGC
CATGTTATAAATATTTCATTGAAGAACACTCAGGGAGGAAGAATTCTGCA
TACACAATAAAACTCAAGCAAGAAATAGTATGCAGAAAAACACTGCAGTG
GGAAAAGCACAGTCTACCATATAGTACAAACAATTCATCAGGGCTTGGGA
TGTCAGGGAGTCGCAGGCTCTAGGTGCTATGTGCTCTTAGGAAAATAAAC
ACTCATCTGTACCTGGAGTTTGCCACTATTATGGTTAACAAACGGCACTT
TTCAACCCTTGATGATTGCCCCACATGGGCTTGTAAATTTTGCATGAATA
TAAGACTTACATTGTAGCAAGTGGCTAGAAATAACACTGAGCTATTTGTT
CATTTTTGACAACTTTCGTTGCAACACAATCTTATCTAAAGTATTTAATA
TTTTAAATGACATCAGAAGAAAATTCTGAGATGCCAGTGGGGAAAAGCTA
ACTATTTTTCTACTTTAACTCAATATGTGCTAAAATATGGCTGATTTGAC
CTTGTTTACCAATCTGCGCCATGAAACCTTCATTCCCTTCCTTCAAAAAG
GCGTCTATAACCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_o20.g1 MSMg01no096_o20.g1 CHROMAT_FILE:
MSMg01no096_o20.g1 PHD_FILE: MSMg01no096_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:28 2005
         (400 letters)



>mm_chr11_10417046_10417845
          Length = 800

 Score =  712 bits (368), Expect = 0.0
 Identities = 392/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagagctcaaaggtttgctgagggcagacaaataaatctagcttggaattgcttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagagctcaaaggtttgctgagggcagacaaataaatctagcttggaattgcttgttt 260

                                                                       
Query: 61  atttaatggtctgccatgttataaatatttcattgaagaacactcagggaggaagaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaatggtctgccatgttataaatatttcattgaagaacactcagggaggaagaattc 320

                                                                       
Query: 121 tgcatacacaataaaactcaagcaagaaatagtatgcagaaaaacactgcagtgggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatacacaataaaactcaagcaagaaatagtatgcagaaaaacactgcagtgggaaaa 380

                                                                       
Query: 181 gcacagtctaccatatagtacaaacaattcatcagggcttgggatgtcagggagtcgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacagtctaccatatagtacaaacaattcatcagggcttgggatgtcagggagtcgcag 440

                                                                       
Query: 241 gctctaggtgctatgtgctcttaggaaaataaacactcatctgtacctggagtttgccac 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctaggtgctatgtgctcttagggaaataaacactcatctgtacctggagtttgccac 500

                                                                       
Query: 301 tattatggttaacaaacggcacttttcaacccttgatgattgccccacatgggcttgtaa 360
           |||||||| |||||||| | |||||||||||||||||||||||   | ||||||||||||
Sbjct: 501 tattatggctaacaaactgtacttttcaacccttgatgattgcattatatgggcttgtaa 560

                                                   
Query: 361 attttgcatgaatataagacttacattgtagcaagtggct 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttgcatgaatataagacttacattgtagcaagtggct 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)