Query= MSMg01no097_h03.b1 MSMg01no097_h03.b1 CHROMAT_FILE:
MSMg01no097_h03.b1 PHD_FILE: MSMg01no097_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:11 2005
(483 letters)
>mm_chr11_93846345_93847226
Length = 882
Score = 882 bits (456), Expect = 0.0
Identities = 477/484 (98%), Gaps = 2/484 (0%)
Strand = Plus / Plus
Query: 1 gctatgcagg-aaaaaaaaaaactgtcttgccaacccccaaataataaaataaaaatata 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gctatgcaggaaaaaaaaaaaactgtcttgccaacccccaaataataaaataaaaatata 259
Query: 60 taaataaataaaaatagagaaaggagcaaaaaaggaaagttgttagcttgaagaacgaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaataaataaaaatagagaaaggagcaaaaaaggaaagttgttagcttgaagaacgaat 319
Query: 120 tttgccatccttagaattctaagataatagatttgaatgaaacttttttttttttttttg 179
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 320 tttgccatccttagaattctaagataatagatttgaatgaaac-ttttttttttattttg 378
Query: 180 gtttttcaagatttttagtatagtcaaatgaggaagtccattgcgtttcagcgcttcaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtttttcaagatttttagtatagtcaaatgaggaagtccattgcgtttcagcgcttcaca 438
Query: 240 gccaaatgaggggaagagtctgctttagtgtctctgcctccttgtctgtgacgatgaggg 299
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 gccaaacgaggggaagagtctgctttagtgtctctgcctccttgtctgtgatgatgaggg 498
Query: 300 tagaaatgtgtctgctgcattcagcttcagatttcacatcatcatgcttgtttttcctga 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 tagaaatgtgtctgctgcattcagcttcagatttcacatcatcgtgcttgtttttcctga 558
Query: 360 tcttgatggacttgtccttttgcctggctgtgatcagagagttcttcagcattctgcagt 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 tcttgatggacttgtccttttgcctggctgtgatcagaaagttcttcagcattctgcagt 618
Query: 420 atgagagacagcccaaggcttgtgtctggcacctggtgaaaactcaaagacttttttttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atgagagacagcccaaggcttgtgtctggcacctggtgaaaactcaaagacttttttttt 678
Query: 480 tttt 483
||||
Sbjct: 679 tttt 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no097_h03.g1 MSMg01no097_h03.g1 CHROMAT_FILE:
MSMg01no097_h03.g1 PHD_FILE: MSMg01no097_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:11 2005
(293 letters)
>mm_chr11_94004579_94005271
Length = 693
Score = 509 bits (263), Expect = e-148
Identities = 284/291 (97%)
Strand = Plus / Minus
Query: 1 tctgctaacaagctccttacattccacgcctcatgacaccttggctcttctctcccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctgctaacaagctccttacattccacgcctcatgacaccttggctcttctctcccactg 338
Query: 61 attggtttattcagtcatttatgtgtctcaggctggtaaatgtgtttttacctctgggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 attggtttattcagtcatttatgtgtctcaggctggtaaatgtgtttttacctctgggct 278
Query: 121 atgatccagtcctgtttgctgggctgagcagttgctccagcatgacacacccacattccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgatccagtcctgtttgctgggctgagcagttgctccagcatgacacacccacattccc 218
Query: 181 ggggctcttgtcttcagtccttccttccttccttccttccttccttccttccttccatcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 217 ggggctcttgtcttcagtccttccttccttccttccttccttccttccttccttccttcc 158
Query: 241 ttccttccttccttccttccttccttccttcctcccttcctccctccctcc 291
||||||||||||| ||| ||| ||| ||| ||||||| |||||||||||||
Sbjct: 157 ttccttccttcctccctccctccctccctccctccctccctccctccctcc 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
