BAC Information

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BAC

Clone NameMSMg01-098A17
Chromosome11 (Build37)
Map Location 105,137,129 - 105,137,417
singlet/doubletsinglet
Overlap geneTlk2
Upstream geneMapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, 1700052K11Rik
Downstream geneMrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098A17.T7 (MSMg01no098_a17.b1)MSMg01-098A17.TJ (MSMg01no098_a17.g1)
ACCAG314325AG314326
length781772
length of high quality
(start - end)
289 (126 - 414)246 (121 - 366)
definitionCHROMAT_FILE: MSMg01no098_a17.b1 PHD_FILE: MSMg01no098_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:00 2005CHROMAT_FILE: MSMg01no098_a17.g1 PHD_FILE: MSMg01no098_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTTCNCTTCCNNCCCCCCCCCTTTTCCCCTTNTTCCCCTCTTTT
TCCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAAAGAGGA
TCCGCGGAATTCAGTATGTCCTCTTCAGCCTGGAATTTGTAGGTATACAC
AAAGCATTTACTGAGAAGTCTGTATTTTCTTTAAACCACTACTTTCAGGA
TTCCAATGATTAACTGCAAAGAAGAATCCCAGTGAGGTGGTGGGTATGGC
CCCAGGCTGCTCCACTGCCTTCTTCCTCACCTTCCTCCCATAAAGACATT
GGTAGAAGATCACACCCACTGACCAAACATCGACTTTATTTGAGATCTTT
GGTGGCTCTTTCCCAACCACAAAATACTCTGGTGGTAAATACCTAGGAGA
AAACAGAAAAAAAACACTCAGAAAATTAAATATATAAATCCTAGCTGTAT
ACAAAAAGGCAAATAAAGGGCTAAAAACTGAGCACTCAGCACTGAGGAAC
AGGGGCAAAGGGGGCCGAAACTGTGAATAGCGACAATCAGAACAATCAGA
GCTAAGGAGAAAGACCTTGCCTCACATTAAACAAAAATACATTTTATATA
AAATGTGCACATGTGTTATCCATACCCACACACCCTTATACCCTTCTTTT
ATGACTCAACTATCAGGTTATAAATATATTCTAGGCCCCCTGTGCAGATG
TTTCACTGGTCCAAGATTACCCGACTGCTCTTCCGAAGGTCCTGAGTTCA
TATCCCCGCCCCCACCTGTTGGTTTCACAAC
NGGGGGGGGGCCNGGNNNNNCGCCNNCCCCCCNCCCCNCCAGTACNNNCC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTCCATAGAGGGTAGGTGA
ACTATAGAATTGCCCCGCGGAATTCTTATAGGATCATCATAAAAAATTGA
GAAGTCATCTATTTGTCTATACAGCATTACTACAAGATAGTATGTCTTTG
TAGTTCTGCAGAGATCTATTCAAAAGGGTAGGCTAATACCTAGTGATTGT
TATATAGTTAATAACAGGAAAAGCATATTAGTAGCAGAAATATTTCCTAA
AATGATCTTATTCATGAGCCTTGCCTATTAGAGCAAGTCTGTAGTGGCTT
TTTTTTTAAATCCAAGGCATTTAATTTCAGGAAGATCAGCTGCTAGTTAT
TAGCTTGTCGTATGATAGCTCCTGACAATGAGAGTTTCCCTGCAAAGTAG
ACATATTTATTAAGCCCCCTTCATAGAACAAGACAATTATCTTTAACACA
CTGTACATGCAGTTGTAAAAAGTACTGCTGTATTTACTTAGTCATTGAAC
TATGATTATTTTGTCTACTTCATAATCAAAATGACCTTTCTACCAAATAG
AACAGATTTTTAATGTTTTGACATATTTCTAGCCCCTGGTTTAATATATA
AGATTACCTAATTATAAATTTTATAACCTTTGAACGATGTTTATAAATTC
TCTGAAATTTTTAATAATTGCTCTAAAGATATTTTGAAATCCCTCCCCTT
CTGTTCCCTTTATAGTTCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_a17.b1 MSMg01no098_a17.b1 CHROMAT_FILE:
MSMg01no098_a17.b1 PHD_FILE: MSMg01no098_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:00 2005
         (289 letters)



>mm_chr11_105136929_105137617
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcctggaatttgtaggtatacacaaagcatttactgagaagtctgtattttctttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagcctggaatttgtaggtatacacaaagcatttactgagaagtctgtattttctttaaa 430

                                                                       
Query: 61  ccactactttcaggattccaatgattaactgcaaagaagaatcccagtgaggtggtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccactactttcaggattccaatgattaactgcaaagaagaatcccagtgaggtggtgggt 370

                                                                       
Query: 121 atggccccaggctgctccactgccttcttcctcaccttcctcccataaagacattggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 atggccccaggctgctccactgccttcttcctcaccttcctcccataaagacactggtag 310

                                                                       
Query: 181 aagatcacacccactgaccaaacatcgactttatttgagatctttggtggctctttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagatcacacccactgaccaaacatcgactttatttgagatctttggtggctctttccca 250

                                                            
Query: 241 accacaaaatactctggtggtaaatacctaggagaaaacagaaa-aaaa 288
           ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 accacaaaacactctggtggtaaatacctaggagaaaacagaaataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)