Query= MSMg01no099_o23.b1 MSMg01no099_o23.b1 CHROMAT_FILE:
MSMg01no099_o23.b1 PHD_FILE: MSMg01no099_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:38 2005
(488 letters)
>mm_chr11_108163293_108164181
Length = 889
Score = 607 bits (314), Expect = e-178
Identities = 335/348 (96%), Gaps = 11/348 (3%)
Strand = Plus / Plus
Query: 152 tgggggtggggcagagggaggactgcagcaggctggtggtgggcagccacatatttattt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgggggtggggcagagggaggactgcagcaggctggtggtgggcagccacatatttattt 401
Query: 212 tctgtgggaggtatgagttcagtaaccctggaaatcaatagcctaaagaaactgcggaca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctgtgggaggtatgagttcagtaaccctggaaatcaatagcctaaagaaactgcggaca 461
Query: 272 catggaggctccaggaaagggctccctcctctcagagctacccacaggaacaaagtattt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catggaggctccaggaaagggctccctcctctcagagctacccacaggaacaaagtattt 521
Query: 332 gcagcccagggcagggca----------gggggggggggc-tctagaaggatggctggct 380
||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 522 gcagcccagggcagggcgcggggggggggggggggggggcctctagaaggatggctggct 581
Query: 381 tctctctccatcaagccaggataataaaatccaggagatggaagccaggctcttggcaaa 440
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 582 tctctctccatcaagccaggataataaaatccaggagatggaagccaggttcttggcaaa 641
Query: 441 atgttgcaagagaacagctttgtatccgaaagatgggtccacctgata 488
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atgttgcaagagaacagctttgtatccgaaagatgggtccacctgata 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_o23.g1 MSMg01no099_o23.g1 CHROMAT_FILE:
MSMg01no099_o23.g1 PHD_FILE: MSMg01no099_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:38 2005
(361 letters)
>mm_chr11_108245140_108245900
Length = 761
Score = 578 bits (299), Expect = e-169
Identities = 335/361 (92%), Gaps = 24/361 (6%)
Strand = Plus / Minus
Query: 1 cttcctgaatttcacttacctgagctgctactgagctatactttgtggttgatgttttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 690 cttcctgaatttcacttacctgagctgctactgagctatactttgtggttgatattttac 631
Query: 61 tggacttcttgaaattaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 120
||||||||||||||||||| ||| |||| |||||||||||||
Sbjct: 630 tggacttcttgaaattaaa-------------------aaa-aaaggaagaaagaaagaa 591
Query: 121 agaaagaaagaaagaaagaaagaaagaaagaacacaaaacaacaaaccgacagaaatttg 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 590 agaaagaaagaaagaaagaaagaaagaaa----acaaaacaacaaaccgacagaaatttg 535
Query: 181 tagtttagtaagtctgagatacgaggttataaataaagtaacaaaggagaggcactgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tagtttagtaagtctgagatacgaggttataaataaagtaacaaaggagaggcactgtgt 475
Query: 241 ttccttgcttgtaaggatataatgataaaaatggaaatacctctggcatgccaaaacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttccttgcttgtaaggatataatgataaaaatggaaatacctctggcatgccaaaacaag 415
Query: 301 tgagcacaaaacagcatggggcacgctgacagctgcaaacagctgaacgtcaccagtgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgagcacaaaacagcatggggcacgctgacagctgcaaacagctgaacgtcaccagtgca 355
Query: 361 g 361
|
Sbjct: 354 g 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
