BAC Information

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BAC

Clone NameMSMg01-100G17
Chromosome11 (Build37)
Map Location 23,990,903 - 23,991,316
singlet/doubletsinglet
Overlap geneBcl11a
Upstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100G17.T7 (MSMg01no100_g17.b1)MSMg01-100G17.TJ (MSMg01no100_g17.g1)
ACCAG316126AG316127
length793784
length of high quality
(start - end)
324 (105 - 428)414 (134 - 547)
definitionCHROMAT_FILE: MSMg01no100_g17.b1 PHD_FILE: MSMg01no100_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:16 2005CHROMAT_FILE: MSMg01no100_g17.g1 PHD_FILE: MSMg01no100_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNACTNNNTNNNCCCNNNNNNNTCTT
TGTACNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGCGCTTACCTATCTGACCCTAGGCTTTTTGTGGTT
GACTGCTTCTATTTACTTAGGGTTTATAGGCCTATTTAAATTACCTATCT
GATCTTGATTTAACTTTGGTAAAAACTGAGAAAATTATCCAATTTGTTTA
GGTTTTCCAATTTAGTGGATTATAGGTTCTTAAAGTATGTTCTAATAATT
GTTAGATTTCTTGATGTCTGATGTTAGGTCTCCCTTTTTGTTTCTGATAT
TGTTGATTTGAATGTTCTCTCTCTGTCTTTTATTTAGTTTGGATAAGGAT
TTGTCCATCTTATTGATTTTCCTTTCCGCTCTTCTGGCTGGACTGGCCTG
CGGTTGATTAGAGATGTTCTGTCTAACTTGATAGATGGTCTTCTGATGGG
CTGGATGCACTCTGGTCCATCTCGGACTTGCCATACAAGTTAATGTCTGT
AGACGCGTGTGTTCTTTTGACTGCCATTAAGCCTTCTGTTATTCCAGTTT
GCCGGCCCGTCCTTTTGATGTATTATAACTTCTTCTGATGAATAGATTAG
GAACCCCTTTTTTGTACTGTCTTACACACCATCTTACCAGTGGCCCCCCC
CCCTTAACCGCACATTTTATTCCCCTTCTTGGTTATCATCATATTCCGCC
CCCTACCCCTTTTCCTCTACCTCTGACCTACCCTACTATCCTT
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTTTNNCCCTTTNTCCTTCCC
TCTTNNCCCGATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCGTCAGGTTGCA
TTTCCTGGAAATTAAGTTTGTGACAGAAAATGAGTCCAGTAGCAATAATA
TGGTTCGTGCTCAAATTAATTAGGTCATTGTTGCAAAAACTACATGGCAA
ATTACAAAGGTAAATTTACAGATATTGGCCGGGTCTGCAGACTTGGCAGC
GAAAGGGAAAAGCAGCTTAAGGGCACTGATTTACCTGGGCCACTCCAGGG
ACAGAGAGGAGGGCACAGTGGTCAGTTCTCTATTTGTATTACAAATAAAA
AATACCAGCTATTTTCCATTAAATTATATAGTCTGCACATATTTTATGAA
CTTTATTAACATCCTCCAAATTAACACATAAAATAAAAACCTGTTTGAAA
TATTAAAAATGGGCCCTACTGTAAAAAACGTATTTTTTTCTTTGAAATAA
AAACAGTGCTGACATAGTCATGACCCAAATGATATCTGAACTAGCAAAAA
GGTACCAAAGATTCTTGGTGATTAAATCTCACGATAAATTGTGTAAATGT
GCCAAACTTCGGCCTAGCTCGATGCTAAGTGCTTTTTACTGAAAGAGGCT
AGAACTACTGTGAACAACAAAGAATGCGTCTTGCAATAGAATTTTGTCAA
ATAATTTCCTTGGGTCATTAAGGAGCTCACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_g17.g1 MSMg01no100_g17.g1 CHROMAT_FILE:
MSMg01no100_g17.g1 PHD_FILE: MSMg01no100_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:16 2005
         (414 letters)



>mm_chr11_23990703_23991516
          Length = 814

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattcgtcaggttgcatttcctggaaattaagtttgtgacagaaaatgagtccagtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttattcgtcaggttgcatttcctggaaattaagtttgtgacagaaaatgagtccagtagc 555

                                                                       
Query: 61  aataatatggttcgtgctcaaattaattaggtcattgttgcaaaaactacatggcaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aataatatggttcgtgctcaaattaattaggtcattgttgcaaaaactacatggcaaatt 495

                                                                       
Query: 121 acaaaggtaaatttacagatattggccgggtctgcagacttggcagcgaaagggaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acaaaggtaaatttacagatattggccgggtctgcagacttggcagcgaaagggaaaagc 435

                                                                       
Query: 181 agcttaagggcactgatttacctgggccactccagggacagagaggagggcacagtggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcttaagggcactgatttacctgggccactccagggacagagaggagggcacagtggtc 375

                                                                       
Query: 241 agttctctatttgtattacaaataaaaaataccagctattttccattaaattatatagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agttctctatttgtattacaaataaaaaataccagctattttccattaaattatatagtc 315

                                                                       
Query: 301 tgcacatattttatgaactttattaacatcctccaaattaacacataaaataaaaacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgcacatattttatgaactttattaacatcctccaaattaacacataaaataaaaacctg 255

                                                                 
Query: 361 tttgaaatattaaaaatgggccctactgtaaaaaacgtatttttttctttgaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttgaaatattaaaaatgggccctactgtaaaaaacgtatttttttctttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)