Query= MSMg01no100_g23.b1 MSMg01no100_g23.b1 CHROMAT_FILE:
MSMg01no100_g23.b1 PHD_FILE: MSMg01no100_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:17 2005
(581 letters)
>mm_chr11_79299423_79300404
Length = 982
Score = 1033 bits (534), Expect = 0.0
Identities = 561/582 (96%), Gaps = 20/582 (3%)
Strand = Plus / Plus
Query: 1 gggaataca-ggagactgaagaaagaaagggtaggtgagaatgtattctcttgttcacca 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaatacaaggagactgaagaaagaaagggtaggtgagaatgtattctcttgttcacca 260
Query: 60 tggctgcctgcatccttccacgagatgatggttttgttaggtaatcccctctctgtattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctgcctgcatccttccacgagatgatggttttgttaggtaatcccctctctgtattt 320
Query: 120 actttctggtaactgctctacttcagctggtatttctaactgtttttgtaattgtctaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttctggtaactgctctacttcagctggtatttctaactgtttttgtaattgtctaaa 380
Query: 180 gccctgccttatccttttcatggaatctcttgggtcccaaattgagttttctaccaacta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctgccttatccttttcatggaatctcttgggtcccaaattgagttttctaccaacta 440
Query: 240 gaattttacttctacagattatgtactgtatcttcttctacactcaactattttgaattc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattttacttctacagattatgtactgtatcttcttctacactcaactattttgaattc 500
Query: 300 ataaatttatcttgctctgaggatttcaaatcagggtcatagatatacactaaatttgaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatttatcttgctctgaggatttcaaatcagggtcatagatatacactaaatttgaa 560
Query: 360 gatttttgtgtaccttcttagaatgcctaatatattttaagtagaggcaccattcattta 419
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gatttttgtgtaccttcttagaatg-------------------aggcaccattcattta 601
Query: 420 agaatatgttaaatccttgggtatgatgatgcatgcctttaattccagcatctgggaggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agaatatgttaaatccttgggtatgatgatgcatgcctttaattccagcatctgggaggt 661
Query: 480 actgggaggtactgggaggtagacattctgaatttgagtccaggctggtctacttagtaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 actgggaggtactgggaggtagacattctgaatttgagtccaggctggtctacttagtaa 721
Query: 540 gttccagaccagtctggcctacatactaaaatcctgtctcaa 581
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 722 gttccagaccagtctggcctacatactgaaatcctgtctcaa 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_g23.g1 MSMg01no100_g23.g1 CHROMAT_FILE:
MSMg01no100_g23.g1 PHD_FILE: MSMg01no100_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:17 2005
(360 letters)
>mm_chr11_79422464_79423226
Length = 763
Score = 561 bits (290), Expect = e-164
Identities = 340/364 (93%), Gaps = 14/364 (3%)
Strand = Plus / Minus
Query: 1 tgaagccaggtccaatctatgcatgctacttgctttgg-ttttttaaggtttaggaagat 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 488 tgaagccaggtccaatctatgcatgctacttgctttggtttttttaaggtttaggaagat 429
Query: 60 taagaattaatgagggtaaggcagagcgtacccctgggaactgtttcctggctgtgggcc 119
|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 428 taagaattaatgagggcaaggcagggcgcacccctgggaactgtttcctggctgtgggcc 369
Query: 120 agggagctcagcctgtaagggg---gaaggacacttggacaatgcttccccaaggaaggg 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 368 agggagctcagcctgtaagggggaagaaggacacttggacaatgcttccccaagggaggg 309
Query: 177 gcacattaggggtcacactgtgggcaagtgatctctggtgttctccagcccagtgtcagg 236
||||| |||||||||||| ||||||||||| |||||||| | ||||||||||||||||||
Sbjct: 308 gcacactaggggtcacaccgtgggcaagtggtctctggtatcctccagcccagtgtcagg 249
Query: 237 gcctctgtggacactgttgattcttttgggtttttgttgttgttgttttttgttttttgt 296
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 248 gcctctgtggacactgttgattcttttgggtttttgttgttgtt----------ttttgt 199
Query: 297 ttttcaagacagggtttctctgtgtaaccctggctgtcctggaactcactttgtagacca 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 198 ttttcaagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagacca 139
Query: 357 ggct 360
||||
Sbjct: 138 ggct 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 763
Length adjustment: 9
Effective length of query: 351
Effective length of database: 754
Effective search space: 264654
Effective search space used: 264654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
