BAC Information

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BAC

Clone NameMSMg01-101M20
Chromosome11 (Build37)
Map Location 23,101,301 - 23,101,544
singlet/doubletsinglet
Overlap genenone
Upstream geneEhbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
Downstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101M20.T7 (MSMg01no101_m20.b1)MSMg01-101M20.TJ (MSMg01no101_m20.g1)
ACCAG317119AG317120
length802789
length of high quality
(start - end)
191 (127 - 317)244 (129 - 372)
definitionCHROMAT_FILE: MSMg01no101_m20.b1 PHD_FILE: MSMg01no101_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:09 2005CHROMAT_FILE: MSMg01no101_m20.g1 PHD_FILE: MSMg01no101_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTNTNTTTTTTTTTTTCTCCCCTTTCCCCATAAACA
ANGCCTATCTATAATTGCGGCCGCTATACGACTCCTATTCAACATGGAGC
GCGGAATTCATAGACTCCCCAACCAAACTAGGGGAACCAAATACACGCAA
TCTGTTTTTTTATTTGTTTTTTTGCCTTTTTTTTTTTTTTTTTAAGATTT
TGTGTGAGTACACTCTTGCTGTATTCAGACACACCAAAAGAGGGCATCTG
ATTCCATTATAAATGGTTGCGAGCCACCATGTGGTTGTTGCTGAGAATTG
AACTCAGGTCCTCTAGAAGAACAGTCAGTACTCTTAGTGTTTAAGCCATC
TCTCCAGCCCCAAACAACTTGTTATTTTTTTAAATATATACTTCATATAC
TTATGAGATAATCATAATTGAATGCCTTTGCATTGAAGGTAATAATACTT
GATAATTGGCCTTTTATCTGTGCCTCACCCTAAAACTCATTTGTATATAC
TCCGAAACATAGACACTGAGTTTACTATAACCTTCCTAACAACAACACCA
TCAATCACTTTACCACACTTTCTAGTATCAGAATTTGTAGGCATAAGACT
TTCCACCCCAGCACCTGTGAGTGTCTTATTCGGTCATATATTCTGACAGT
TCCCAGACTGTCCTGCGTTTAATTATTATTACATGTTGTTTTATGGGCCC
CCTTTTCACAATATGTCACAATCATCTTTTTAAATTTTCCTCTAATGATG
AACTATCATAACTTATACTATCTTCCTTATTTACCCCTACTAACCTTAAA
TT
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCTCCCTCTTTTATTT
ATTCTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCTGCGCAATTCACTCTGTAGACCAGGCTGGT
CTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCCCGGCTAACC
TCTTAGTTCTTAAAGCAGTGTCTCACCAGGAGCATATGCCTTGAGAAAGG
GAAATGTGTAATAAATGTTTCAGTTGTCCCAAGCTGAAGGACTTCAAAAC
AGAAGAAACACTGATAGGTCTTGGGGATCACAAGAAATTTGGAGCTCCTG
AGCTCGTCTTATAGAAACTGGAAATTTTTACTGGAGAGATGGCTCCGCGA
TTAAGAGCACTGACCTCTCTTCCACAGGACACCAGGTATCCTAGAACTGG
AGCTACAGATGTTGAACTGCCATGTGTGATGCTGGGAACTGAACCCAGGT
CCTCTACAAACCCAGCGAGTGTTCTTCATCTTCTCTTCAGCCAATTCTGT
GTGGTTGATATACTATCCCCATCTGTGGCCCACTCCAGCTTGTATATCTT
ATTGTACTAAAATGTTGTCCTTAAATGTACATGTTTTCCTTCTGTATCTG
CTTCCAAGTGCTGTTATAATTAGTATTACTCAATATTATGCTCTTGATTG
ACTCACCTATTTACTTAATAATATCCTGCAAATACAAAAACAAATATATG
ATATTTTATATAACAGTCGCTAACATACCATTCCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_m20.g1 MSMg01no101_m20.g1 CHROMAT_FILE:
MSMg01no101_m20.g1 PHD_FILE: MSMg01no101_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:09 2005
         (244 letters)



>mm_chr11_23101101_23101744
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactctgtagaccaggctggtcttgaactcagaaatccacctgcctctgcctcccgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactctgtagaccaggctggtcttgaactcagaaatccacctgcctctgcctcccgagt 260

                                                                       
Query: 61  gcccggctaacctcttagttcttaaagcagtgtctcaccaggagcatatgccttgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccggctaacctcttagttcttaaagcagtgtctcaccaggagcatatgccttgagaaa 320

                                                                       
Query: 121 gggaaatgtgtaataaatgtttcagttgtcccaagctgaaggacttcaaaacagaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaatgtgtaataaatgtttcagttgtcccaagctgaaggacttcaaaacagaagaaa 380

                                                                       
Query: 181 cactgataggtcttggggatcacaagaaatttggagctcctgagctcgtcttatagaaac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgagaggtcttggggatcacaagaaatttggagctcctgagctcgtcttatagaaac 440

               
Query: 241 tgga 244
           ||||
Sbjct: 441 tgga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)