BAC Information

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BAC

Clone NameMSMg01-101N14
Chromosome11 (Build37)
Map Location 7,024,065 - 7,024,265
singlet/doubletsinglet
Overlap geneAdcy1
Upstream geneNudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream geneLOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N14.T7 (MSMg01no101_n14.b1)MSMg01-101N14.TJ (MSMg01no101_n14.g1)
ACCAG317151AG317152
length727726
length of high quality
(start - end)
241 (76 - 316)204 (71 - 274)
definitionCHROMAT_FILE: MSMg01no101_n14.b1 PHD_FILE: MSMg01no101_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:13 2005CHROMAT_FILE: MSMg01no101_n14.g1 PHD_FILE: MSMg01no101_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAGAGCCGCGGAA
TTCTTTGTTTTTCCATTTTTTAGTAGGGTTATTTGGTTTTCTGGAATCCA
ACTTCTTGAGTTCTATCTATCTCTCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCCATCTACATATATATATATATAT
TGGATATTAGACCCCTATTGGTTTTAGGATTGGTAACGATCTTTTCCCAA
TCTGTTGGTGGCCCTTTTGTCCTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGCTGATTTTTTTTCTTTCAGCACAAGCCATTGCTGTTC
TGTTTAGGAATTTTTCCTCTGTGCCCATATCTTCGAGACTCTTCCCCACT
TTCTCCTCTATAAGTTTAAGGGTCTCTGGTTTTATGTGGAGTTCCTTGAT
CCACTTACACCTGAGCTTTGGACAAGGAGATAAGAATGGATCAATTCCAA
TTCTTCTATATGATAACAGCCAGTTGAGCCAGCAACATTTTTTTGAAAAT
ACCGTCTTTTTTCCACTGGATGGTTGTAGCTCCCTTGTCAAAGATCAAGT
GACCATATGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCCATTTG
GTGTACTTGTCTGCCTCTATACCAGTACCATGCAGTTCTTATCCCCTTGC
TCTGTAGAACAGCTTTATTGGCGGGCT
ATTGCTGCGGTAGGCCTGGCGGCGCCTGGTTCAAAATAGGGGGTGAACTA
TAGAATTTTCCAAGAATTCTCTCTGACGCCCACTCCCTACCTATCTAGCA
CACACTCCAACCCATCTCTCCTTCCAGGCGCCAGATGTTTGCTCTCTACA
TACCCTGCAGCCACCTAATTCAACAAATTGCTGGCTTTCACAATTAACTT
ATAGAAGACTCTGCCCTGAGCACTTGTGCTTGACAATGCATGGACCATGC
CAGTGTGCTCTAACAACACTATCGGCATGAGCACAACTAGCCAGCCCTTT
CACTTCAGCCCTCCATGTTTTTGAATAGCTTCTTCATATTTCTCAAGCAG
GCAAACTGATTTCCGCACCCCCCCCTTGATATGATTGAATGTCTGTGGCT
GCATAGCGAACCCTGTCCCCGAATTGAAGCCCACCGAAAGGTTTCGTGGT
GGTAAACGCCCTGAAGGCTATAACACAATGTGTGCCAGTGAGCAAATTCC
TGATGCCCCTGTATCCCATAAGACCCACTCCTGGTAACTCCAATACTCTG
TGACTACCCCTCTGCATACACCCATTACTGATCCACATCTCTCGTACCGT
CACCTCAATAACCTTACACTGTATTACCTCTCCTTCATTACTACTTAATT
TTACTTCAATTGGATCATTCTGCATCCTGCACCCACTGCTCCTCTCCTCC
CCACACGTCCTCAATGCTCAACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n14.g1 MSMg01no101_n14.g1 CHROMAT_FILE:
MSMg01no101_n14.g1 PHD_FILE: MSMg01no101_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:13 2005
         (204 letters)



>mm_chr11_7023865_7024468
          Length = 604

 Score =  360 bits (186), Expect = e-104
 Identities = 198/202 (98%), Gaps = 2/202 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgacgccca-ctccctacctatctagcacacactccaacccatctctccttccaggc 59
           |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 401 ctctgacg-ccagctccctacctatctagcacacactccaacccagctctccttccaggc 343

                                                                       
Query: 60  gccagatgtttgctctctacataccctgcagccacctaattcaacaaattgctggctttc 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gccagatgtttgctccctacataccctgcagccacctaattcaacaaattgctggctttc 283

                                                                       
Query: 120 acaattaacttatagaagactctgccctgagcacttgtgcttgacaatgcatggaccatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acaattaacttatagaagactctgccctgagcacttgtgcttgacaatgcatggaccatg 223

                                 
Query: 180 ccagtgtgctctaacaacacta 201
           ||||||||||||||||||||||
Sbjct: 222 ccagtgtgctctaacaacacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)