Query= MSMg01no101_o12.b1 MSMg01no101_o12.b1 CHROMAT_FILE:
MSMg01no101_o12.b1 PHD_FILE: MSMg01no101_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:18 2005
(602 letters)
>mm_chr11_81139587_81140588
Length = 1002
Score = 1094 bits (566), Expect = 0.0
Identities = 575/578 (99%)
Strand = Plus / Minus
Query: 1 aatggctctgtcggtaaggcactttgccttgcaagcacatggaatcctcacaatctatgt 60
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 578 aatggctctgtcagtaaggcactttgccttgcaagcacatggaatcctcagaatctatgt 519
Query: 61 aaaaacttgaggaaacaacaggcactggtggtgcacgcctttcatcccagcacatcccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaaaacttgaggaaacaacaggcactggtggtgcacgcctttcatcccagcacatcccag 459
Query: 121 ctcactctgtgagcttcaggacagctagggcacacatacttatccccacatgaacatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctcactctgtgagcttcaggacagctagggcacacatacttatccccacatgaacatgca 399
Query: 181 aatctatgttataccctcacacacaaaataatgttgcacttttaaaattcctcactctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatctatgttataccctcacacacaaaataatgttgcacttttaaaattcctcactctct 339
Query: 241 gtatgtatcttggaaaaaaaacaaaataaatagatgatagatagacagacagacagttag 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 338 gtatgtatcttggaaaaaaaacaaaatacatagatgatagatagacagacagacagttag 279
Query: 301 gtagatagataataaatagacagatagacagacagacagagtgggcaagcagaaaggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtagatagataataaatagacagatagacagacagacagagtgggcaagcagaaaggaaa 219
Query: 361 ggataggtgaagccctgaaacttgatgaccagacgacctaaccttttcagtgagttccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggataggtgaagccctgaaacttgatgaccagacgacctaaccttttcagtgagttccag 159
Query: 421 accagtgagtgatcctctcaaaaatcaagtgagatagttccttaggaatgatacccaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 accagtgagtgatcctctcaaaaatcaagtgagatagttccttaggaatgatacccaaag 99
Query: 481 ttgtcctctggtggcctcctcattcatgcacatgcatgtctatatacatcagcatgcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ttgtcctctggtggcctcctcattcatgcacatgcatgtctatatacatcagcatgcata 39
Query: 541 cctatagccatacacacatgtaaatctatgactatacc 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 cctatagccatacacacatgtaaatctatgactatacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_o12.g1 MSMg01no101_o12.g1 CHROMAT_FILE:
MSMg01no101_o12.g1 PHD_FILE: MSMg01no101_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:18 2005
(339 letters)
>mm_chr11_81082898_81083639
Length = 742
Score = 630 bits (326), Expect = 0.0
Identities = 338/342 (98%), Gaps = 3/342 (0%)
Strand = Plus / Plus
Query: 1 aatttacttatgcataactgccacatgctgctttagttaaagcaaagactgcctatcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttacttatgcataactgccacatgctgctttagttaaagcaaagactgcctatcttt 260
Query: 61 ctgga-ttaaaaaaaaa-taaacaaggaaagaaagaa-ttaaaatgtgtttggaagtatt 117
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctggaattaaaaaaaaaataaacaaggaaagaaagaaattaaaatgtgtttggaagtatt 320
Query: 118 ctgatcttccctgaaaagtctcatggaggaagaattgactataagcacccgagtaagtaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatcttccctgaaaagtctcatggaggaagaattgactataagcacccgagtaagtaa 380
Query: 178 aaaatgatgtctcgggctgccgaggaatttactgacccttgaataagaacacattcatgt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgatgtctcgggctgccgaggaatttactgacccttgaataagaacacattcatgt 440
Query: 238 ggaggatgaaaacaattgctgccaggctttgccagcaccagccccctgctgcttttacta 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggaagaaaacaattgctgccaggctttgccagcaccagccccctgctgcttttacta 500
Query: 298 tagaacctcacaagactgaagcaagtgaacactttggcaccg 339
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaacctcacaagactgaagcaagtgaacactttggcaccg 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 742
Length adjustment: 9
Effective length of query: 330
Effective length of database: 733
Effective search space: 241890
Effective search space used: 241890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
