BAC Information

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BAC

Clone NameMSMg01-102A03
Chromosome11 (Build37)
Map Location 79,991,592 - 79,992,111
singlet/doubletsinglet
Overlap geneCenta2
Upstream geneLOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik
Downstream geneRnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A03.T7 (MSMg01no102_a03.b1)MSMg01-102A03.TJ (MSMg01no102_a03.g1)
ACCAG317269AG317270
length727739
length of high quality
(start - end)
522 (93 - 614)99 (121 - 219)
definitionCHROMAT_FILE: MSMg01no102_a03.b1 PHD_FILE: MSMg01no102_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:27 2005CHROMAT_FILE: MSMg01no102_a03.g1 PHD_FILE: MSMg01no102_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCCAGGGACNNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCTTCTCCATATCCGCTCCTCAAGACT
GAGGAGAGTTTGCTGGAAGGAGCACGGGGAGTCGTAGGATCAACCACACC
CTGGAGTTCACTAGTGGGGCAGCTGCTGGCCTCAGGGCTTCCTTCTGGAC
AACTAGGGCTGAGGTGAACACTTCTCCAGAACTTCAGATGCACAGTAGCC
AGCCAGATCCTCCGAGATGGGTCACCCCAGGCCACAGCCAGTCTCTGCTG
ATGTGGCTGCAAGGGGACAAGGGGGGTTGGGAAAGGCAGCCATGCTGGTG
CGGTTCTCCGGCCGGACATGTGTGTTCTGACAGAGGGAGCCAGGACAACA
CTGAAACTTTAAATGAGAGAGAGAGAGAAGAAAATAAAACAGACCAAAGG
AGAAAGACAGAAGACAGAGAGGAAAGGAGTGGCAGAGACTCGGGGATTCA
GCCCCACGGAGAGCAGAGAACAGCTGTCAGAGTGCTCAGTCAATTGGCTT
CTGTGTCCTTGGGCTTGGGAACTGGATGGTAAAGACAGTTGTGGGTTAGG
TTTTTTTTGTTTGTTTGTTTTGCCTGCGTTCTAGATCCTTATACCCCTCC
TCCGCCCTTCCCTTCCCGCCTCTCGTCCCCTCCCCCGCTTCTCCTCTTTC
TCCCTCTCATTCTCCATCTTCCTCTCT
ATGCTGTGTGAGGCCTGGCGGCCGCCTGGCTCCAAAATAGGGGGTGAACT
ATAGAAGGTTTCGCGAAATTCAGTTCAAAGAGGCGTCCGGGCCCGCGGTC
GGCAGCGCGCACGGTCCACCCAAGCCGCGCCTCCGCGAGAAGCGCCTCCG
CGTGACTGACGGCGGACTCTGCGGACCATCGGGCTGGGCGGCCCGGCGGC
GCGCGCTCCCGCCGGCCAATCATAGCGCCGGGCGTGGAAAGTGGGCGGAG
CGAGGCCAGGGTAGGGTGAGCGGCCTCCGAATTGGAGCGGGGCTCGCAGG
AGACACTTTTTTTTCTTTTCTTCCCGCCGTCCCTCCTCCCCTCCCCCATT
CCTTTCCCCTCTCCTCTCCCCCCTCCTCATTCTCCCCTCGGCCCTCTGCA
TCTTGTTTGCCTTACCGCTCGATGATTCAGGTGCGTTCATTTTCCGGTCC
CGTCCGTAGCCCACGCGGTGCCTCTCGCGCCACCCCCACTCTCAACGTTA
CCATCATAAGTTCCGAGCCCGCACTTAAGCTGCTCCTTTGTCACCTTTTA
CTTTGTCTCTCCGTTTCTCGCTTCTTCTTCATCTTCCCCTCACGTTGTAT
TTAATTCTTTTCTCTCGCCCTCTTCTCGCCCCTTCAAACCCCCTCATGCT
TAACTCTTACTCGCCCCCCCTCCCTTCGTCTTCTCTTTACCTCTTTTACC
TTCCCCTATTTTCCCTTCTTATCTCGCTTGTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a03.b1 MSMg01no102_a03.b1 CHROMAT_FILE:
MSMg01no102_a03.b1 PHD_FILE: MSMg01no102_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:27 2005
         (522 letters)



>mm_chr11_79991590_79992511
          Length = 922

 Score =  955 bits (494), Expect = 0.0
 Identities = 515/522 (98%), Gaps = 2/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaagactgaggagagtttgctggaaggagcacggggagtcgtaggatcaaccacaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcaagactgaggagagtttgctggaaggagcacggggagtcgtaggatcaaccacaccct 463

                                                                       
Query: 61  ggagttcactagtggggcagctgctggcctcagggcttccttctggacaactagggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggagttcactagtggggcagctgctggcctcagggcttccttctggacaactagggctga 403

                                                                       
Query: 121 ggtgaacacttctccagaacttcagatgcacagtagccagccagatcctccgagatgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggtgaacacttctccagaacttcagatgcacagtagccagccagatcctccgagatgggt 343

                                                                       
Query: 181 caccccaggccacagccagtctctgctgatgtggctgcaaggggacaaggggggttggga 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 342 caccccaggccacagccagtctctgctgatgtggctgcaaggggaaaaggggggttggga 283

                                                                       
Query: 241 aaggcagccatgctggtgcggttctccggccggacatgtgtgttctgacagagggagcca 300
           |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 282 aaggcagccatgctggtgcggttccccggcgggacatgtgtgttctgacggagggagcca 223

                                                                       
Query: 301 ggacaacactgaaactttaaatgagagagagagagaagaaaataaaacagaccaaaggag 360
           |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 222 ggacaacactgaaactttaaatgagagagaga-agaa-aaaaaaaaacagaccaaaggag 165

                                                                       
Query: 361 aaagacagaagacagagaggaaaggagtggcagagactcggggattcagccccacggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaagacagaagacagagaggaaaggagtggcagagactcggggattcagccccacggaga 105

                                                                       
Query: 421 gcagagaacagctgtcagagtgctcagtcaattggcttctgtgtccttgggcttgggaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gcagagaacagctgtcagagtgctcagtcaattggcttctgtgtccttgggcttgggaac 45

                                                     
Query: 481 tggatggtaaagacagttgtgggttaggttttttttgtttgt 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  tggatggtaaagacagttgtgggttaggttttttttgtttgt 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)