BAC Information

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BAC

Clone NameMSMg01-102E21
Chromosome11 (Build37)
Map Location 58,292,865 - 58,293,376
singlet/doubletsinglet
Overlap genenone
Upstream gene1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1
Downstream geneOlfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E21.T7 (MSMg01no102_e21.b1)MSMg01-102E21.TJ (MSMg01no102_e21.g1)
ACCAG317487AG317488
length750701
length of high quality
(start - end)
534 (56 - 589)512 (68 - 579)
definitionCHROMAT_FILE: MSMg01no102_e21.b1 PHD_FILE: MSMg01no102_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:51 2005CHROMAT_FILE: MSMg01no102_e21.g1 PHD_FILE: MSMg01no102_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAATCCNTGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
AGAATCCGCGGAATTCTAACCTGAGGATTCCCGAATGGCAGAGAAACACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCACATCAAAACA
ACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCC
ATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGTAATACC
TCTCCTGGGCATATATCCAGAAGATGTTCCAACAGGTAAGAAGGACACAT
GCTCCATTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGGAATACTATTCAGCTATTAAAAAAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGCAATCC
AATCATAAAGGAACTCGCACAACATGTACTCTCTGATAAGTGGACATTAG
TCCAGATACTTAGGATACCCCAGATATAAGATACTACTTGCCATACGCCT
GAAATTTCAGAAGAACGAGTACTCACTGTGGACTCTTTTCCCCTTTCCTA

GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCATTTGCCTCAGCTGCTGCTGCTAGCAGTCTT
ACTAATTTGTTCCTGGCTGAATCACTTCCCTTGTTAGTTTAAACGTGCAT
GGTGGAGGCATGTTTTAATGGATAACTAACATGTGCAGCTGATGGCTCTG
GGTAGTCACCCATATGATGTGGGTACCCATCTGGATACAGCATCAGATGA
ATGTGAGTTTGCTCTCCATCACGCTGATTGTAATTATGGGATGTCCTAGA
ACTAACCTGAAATGAAATTCAACACTCAACTTTGGACTTCTCTCTAAAAC
TGGAGAAAATGAGATGGACGATCCAGGAGGCTGGTCTTTGAGGTCCTTGG
TACTTCAGTGTGGCAGGCTACCTCCCTGACAGCATCAGTTGTAGAGTGTT
CCCAGCCCCGAGGCAATGCTATTCTAGCAGACCCTCACTCTGGCTCTGTT
TCCCTCCCCATAGGGCCCAGAGAGCAGATGAGCAATTCTGGAGACCTCTC
TTGTCTCCAAAGCACATTAAATGCTGATGAGGGAAAGGGGATTTGGAAGA
TTTGGAGCACATACCCTTGAAATGTTCTTACATACACAGCCCTGTCCCCT
TACCAGAGAGATAATTTTCTTACAATTAAAGCACATACCGTTGTCCCCCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e21.g1 MSMg01no102_e21.g1 CHROMAT_FILE:
MSMg01no102_e21.g1 PHD_FILE: MSMg01no102_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:51 2005
         (512 letters)



>mm_chr11_58292665_58293576
          Length = 912

 Score =  944 bits (488), Expect = 0.0
 Identities = 506/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatttgcctcagctgctgctgctagcagtcttactaatttgttcctggctgaatcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatttgcctcagctgctgctgctagcagtcttactaatttgttcctggctgaatcactt 260

                                                                       
Query: 61  cccttgttagtttaaacgtgcatggtggaggcatgttttaatggataactaacatgtgca 120
           |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 261 cccttgttagtttaaatgtgcgtggtggaggcatgttttaatggataactaacacgtgca 320

                                                                       
Query: 121 gctgatggctctgggtagtcacccatatgatgtgggtacccatctggatacagcatcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgatggctctgggtagtcacccatatgatgtgggtacccatctggatacagcatcaga 380

                                                                       
Query: 181 tgaatgtgagtttgctctccatcacgctgattgtaattatgggatgtcctagaactaacc 240
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatgtgagcttgctcttcatcacgctgattgtaattatgggatgtcctagaactaacc 440

                                                                       
Query: 241 tgaaatgaaattcaacactcaactttggacttctctctaaaactggagaaaatgagatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaatgaaattcaacactcaactttggacttctctctaaaactggagaaaatgagatgg 500

                                                                       
Query: 301 acgatccaggaggctggtctttgaggtccttggtacttcagtgtggcaggctacctccct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 acgatccaggaggctggtctttgaggtccttggtacttcagtgtcgcaggctacctccct 560

                                                                       
Query: 361 gacagcatcagttgtagagtgttcccagccccgaggcaatgctattctagcagaccctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagcatcagttgtagagtgttcccagccccgaggcaatgctattctagcagaccctca 620

                                                                       
Query: 421 ctctggctctgtttccctccccatagggcccagagagcagatgagcaattctggagacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctggctctgtttccctccccatagggcccagagagcagatgagcaattctggagacct 680

                                           
Query: 481 ctcttgtctccaaagcacattaaatgctgatg 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttgtctccaaagcacattaaatgctgatg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)