BAC Information

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BAC

Clone NameMSMg01-102F16
Chromosome11 (Build37)
Map Location 52,960,532 - 52,960,743
singlet/doubletsinglet
Overlap geneFstl4
Upstream geneOlfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102F16.T7 (MSMg01no102_f16.b1)MSMg01-102F16.TJ (MSMg01no102_f16.g1)
ACCAG317521AG317522
length778751
length of high quality
(start - end)
212 (132 - 343)---
definitionCHROMAT_FILE: MSMg01no102_f16.b1 PHD_FILE: MSMg01no102_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:55 2005CHROMAT_FILE: MSMg01no102_f16.g1 PHD_FILE: MSMg01no102_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCNNCCCCCAAAGAA
TTTNNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGA
GGATCCGCGGAATTCTGTGTTTCCGACATAATGGGGTACCACTCTCAGGT
GATCCCTGGGAGTTTGACTTTAGACAGCCACCTCACCTAGACACCTTCTA
AGCCTCCAAAATGCTGTGACATGGGTAACTAGCAACCCTGACAAAGTGGG
GACCATAGGAAGGGACCACTGGAGCCTAAGATTACCTTCAAGGATTCTAA
CAAGACTGTGACGAGGAGGGTCAAGAAAAACTCAAATGGAGCTGGGCGTG
GTGGCGCACTCCTTTAATTCCGGCATTTTTTATGTTGAGGCTGGTAGATT
TCTGAGTTCGAGGCTAGTTTGTTCTACCCACCCCCCCTCCAGGACAGTCA
AGGCTACTTAGAGAAACCCTGTCTTGATAAACCAAAAAAATAAAATTTCA
TAGAACGAATCCATTAATGATAGAATTAAAGAAAGAAAGATAGAACGATT
GAACGATAGATTTATTTTCCGCATGAATGAACTTGAATGACTTCAATAAA
ACATAACCCTGTACTAAACCCACCCTGAGGCTCCTGGATTCTGAAACTTA
AGATGTAGTCTGACTGCCTCCGACCTTGCGAAGCGTTGAAATTACCCCCC
CCCTGTTCTTCCTATTGATGCTTTACAAATGGCCCTCAATCGTATACACC
ACACCTACATTTCTACTCTCTCTTTTTG
TGCAGTGAAGAGGCTGGCGGAGCCTGGTTCCAAATAGGGGTGACCTATAG
AAGGATTCCAGAAAAAGAGGAAGCCAGAAGACCTAAAAGAGATCCTATCT
CAATCAATCAATCACTCACTCAATCAATCAATCAATCAATCAATCAATCA
ATCAAACAAACAGATTAATAACTACAAAAATAAAGTGGAGAGTCATGCTG
ATACAGGAGCACAGAAAGATATGCAAACCAGGAGTGATCTATAATACGTT
TTATTTACGCTTCATACTATAGTGTGACAATTCCTTAAGTAATACACTAT
TAACTAACACAGCGTTTTTTTTCTATGCCTAGCACCATCGTTAGCTCGCG
AATTGTTTTTTTTTTCCCCCCCCCCCCCCCATAACTAATAGATAGCAACT
TAAATCCATGTTGATACACAAGTAAAAAAAAAAATATTGTTGGGCGTTGG
GAGGGTTATCATTTCTGCTACCCTCTCTGCCTCTCTAGCGACTCCATTAT
CTTACTCATGTACTCTCTTTTGCTTATCTTGTCTTACCCTTCATACGTCC
TCTCCTCCCTTTCCAGTTTTACTATTCCCTGAATTAATCTAAATCCTTAT
TTTATAGTAATATCAACAATCCGGCGCGCAGTTGTTCATACCTCATTCAC
CTCTCCTCCTCCTCTCTGTTCTTTTTACTACTCATTTTGTTACACTACTC
AACCACCAATATACTGTGTCCTGTCTCTTCATACCGACATCTTTACTCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_f16.b1 MSMg01no102_f16.b1 CHROMAT_FILE:
MSMg01no102_f16.b1 PHD_FILE: MSMg01no102_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:55 2005
         (212 letters)



>mm_chr11_52960332_52960943
          Length = 612

 Score =  395 bits (204), Expect = e-114
 Identities = 210/212 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggtaccactctcaggtgatccctgggagtttgactttagacagccacctcacctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtaccactctcaggtgatccctgggagtttgactttagacagccacctcacctaga 260

                                                                       
Query: 61  caccttctaagcctccaaaatgctgtgacatgggtaactagcaaccctgacaaagtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccttctaagcctccaaaatgctgtgacatgggtaactagcaaccctgacaaagtgggg 320

                                                                       
Query: 121 accataggaagggaccactggagcctaagattaccttcaaggattctaacaagactgtga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 accataggaagggaccactggagcctaagattaccttcaaggactctaaaaagactgtga 380

                                           
Query: 181 cgaggagggtcaagaaaaactcaaatggagct 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 cgaggagggtcaagaaaaactcaaatggagct 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)