BAC Information

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BAC

Clone NameMSMg01-102M12
Chromosome11 (Build37)
Map Location 88,007,605 - 88,104,645
singlet/doubletdoublet
Overlap geneMrps23
Upstream geneTrim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1
Downstream gene1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102M12.T7 (MSMg01no102_m12.b1)MSMg01-102M12.TJ (MSMg01no102_m12.g1)
ACCAG317833AG317834
length700704
length of high quality
(start - end)
194 (118 - 311)177 (66 - 242)
definitionCHROMAT_FILE: MSMg01no102_m12.b1 PHD_FILE: MSMg01no102_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:28 2005CHROMAT_FILE: MSMg01no102_m12.g1 PHD_FILE: MSMg01no102_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,104,453 - 88,104,645)(88,007,605 - 88,007,781)
sequence
TATTTGCGGCGCTATACGACTCCTATTTTCCTACGTGCGCGGAATTCTAT
CGTGTGCCGAAACTCTGCCCCAGTCTCTTTCAACTTGTCACAGCTTCTCT
GCGACTCAACAAGACCGGGAGACATGAGGGACTTTACAGAGACCCAGGCA
ATCTTACGCCCCTCTGAGAGTCCAGTTCAGTCAGAATGGGTTGAGGCTCT
TAGGTGGTCTGCCTTAGAGCAGGGGCTTTCAACCTGTGAATGGCTACTTC
TTTGGGGATTGAATGACCCTTTCACAGAGGTCTCCTAAGACCATTGGAAG
AAATACATACTTTTTTTTTCATAAGTGTCACCTCTGTCAATTGTATAAAC
CCCATTCCCTTGGCAATTACAGATAACACCCACGCCCATCTTTCCTTGTC
ACTTCTTTGTGAAGCTACAAAACCCTAAGAAACTGACAACTCTTTGTGTC
CTGTTAAAATGGCATTCCCAGCCCTTCCTTCCTTCCTTCCTTTCTTTCTT
TTTTTTTTTTCTTATCTCTCTGAAACGGCTTCTCTCGCTAGCTCTGGCTG
GCCTGGAACTCCCTCTGTAGACCAGGCTGGCCCCTAACTCCTAATCCCCT
CTGCCCCTGTCTCCTGAGCGCTGGAATTATTTGCGGGTGCCCCCCCGCTC
GGGTTTCACTTCTCATCTTATCACCTGGTTCTAAACCCCATCCCTGTTGG

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCAGCAATTCCGGTAATAAAGACTTGGTGTTCTCTTGGTGCTC
TGATGTGGCCAGCGCCGTGGGCTGGACCCTCCCTCCTTTTGTTTCCGCAG
GTGAGAGGATTTGGTTTTTGGAGTCTTGCCGAATCCTTGGGTCACCTGCC
TCGCTTTTCCCATCCTCTCCCCCATCTGGTTGCCTCCCCGCCCCCCAAAA
CACACACCTCCGCTAACCTTCACTCAAGGTTGTTTTTAAGACCCAGAGAA
CTCAGTCGCCCTGTTCTTTACCATAGGTGGTGACACCTGCTGTCTGTGTG
ACCTGTTGGCTTTGTCTAGCCAGCCTCCTTCCTCTTTGATGCTCAAAATA
CCAATCCAATCCAAAACCAAATCTCTCTTGCTGATTGGCGAGAAAACCGG
CTTATAACACCTTCCCCGTTGTGACCTCGTTCCTCCCGTGCTTCCCCGCA
TTAATCACCACATCAGGGCCCTATGGTGACTTGCTTTTGTCACCTTCAAC
GCGTGCTTTAACTATCTGTGCACCTTGCACTTCAAAATGATCGCTTATGC
CTTATTTTTTCCCCTCCTCACTCTCCGCTTGTATTCCCTCTCCTTTCACG
TGCTCTCGTCTAAGCATCGTGTCCATCTTATCAACGACTCGGCTCCTTCC
CATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_m12.b1 MSMg01no102_m12.b1 CHROMAT_FILE:
MSMg01no102_m12.b1 PHD_FILE: MSMg01no102_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:28 2005
         (194 letters)



>mm_chr11_88104344_88104937
          Length = 594

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagacatgagggactttacagagacccaggcaatcttacgcccctctgagagtccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggagacatgagggactttacagagacccaggcaatcttacgcccctctgagagtccagtt 243

                                                                       
Query: 61  cagtcagaatgggttgaggctcttaggtggtctgccttagagcaggggctttcaacctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagtcagaatgggttgaggctcttaggtggtctgccttagagcaggggctttcaacctgt 183

                                                                       
Query: 121 gaatggctacttctttggggattgaatgaccctttcacagaggtctcctaagaccattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaatggctacttctttggggattgaatgaccctttcacagaggtctcctaagaccattgg 123

                        
Query: 181 aagaaatacatac 193
           |||||||||||||
Sbjct: 122 aagaaatacatac 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_m12.g1 MSMg01no102_m12.g1 CHROMAT_FILE:
MSMg01no102_m12.g1 PHD_FILE: MSMg01no102_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:28 2005
         (177 letters)



>mm_chr11_88007405_88007981
          Length = 577

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccggtaataaagacttggtgttctcttggtgctctgatgtggccagcgccgtgggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tccggtaataaagacttggtgttctcttggtgctctgatgtggccagcggcgtgggctgg 260

                                                                       
Query: 61  accctccctccttttgtttccgcaggtgagaggatttggtttttggagtcttgccgaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctccctccttttgtttccgcaggtgagaggatttggtttttggagtcttgccgaatc 320

                                                                    
Query: 121 cttgggtcacctgcctcgcttttcccatcctctcccccatctggttgcctccccgcc 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgggtcacctgcctcgcttttcccatcctctcccccatctggttgcctccccgcc 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)