BAC Information

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BAC

Clone NameMSMg01-102O15
Chromosome11 (Build37)
Map Location 4,727,667 - 4,727,914
singlet/doubletsinglet
Overlap geneNf2
Upstream geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7
Downstream geneNipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102O15.T7 (MSMg01no102_o15.b1)MSMg01-102O15.TJ (MSMg01no102_o15.g1)
ACCAG317931AG317932
length765713
length of high quality
(start - end)
245 (83 - 327)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no102_o15.b1 PHD_FILE: MSMg01no102_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:39 2005CHROMAT_FILE: MSMg01no102_o15.g1 PHD_FILE: MSMg01no102_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCCTTTATTCTATAATTGCGGCGCTAAACGACTCCTATAGTCCGAGA
ATCCGCGGAATTCTGGTAGACCTTGCCCAAATTTGCTTTGCTCTGTAAAC
CATGCTGGCCTCTAACTCAGAGGTTTATGTGTTTCTACCTTTTGTGTGCT
GGGAGTAAAGGCATGGGCCAGCATACCCAGAGAGGTTCTACTTATTTAAA
TAGGTTTGTTTGTTGAAATAGGTTGTCAACACGTGGGTCAAGACTCCTTT
GAAGCTGGGCGTGGTGGCGCACACCTTTAATCCAGCACTCGGGAGGCAGA
GGCAGAGTCGGATCTCTGTGAGTTCCAAGACATTCTTTTTTACACAGAGA
AACCCTGTCTCGAAAAAGCATATTAATTTTTCTCAACGAAGATTCCTTTG
AGTCAAATGGCCTTTTCATAGTGGTTGCCTGAGACCATTGCAAAACACAG
ATATTTACTTTATGATCCATAACAGTAACAAAATTACCGTTATACCTTAT
AAATTATAAATTACTCTATGCATGGGATCACCACAGCATTGTACCAATTG
AGTGAAAGAGTCACCATCTCGGCAACGCATATAACCCCTGACTACCTGTT
CCTACTCATCTTGGCTGACTTGGAATTTTGCTCCTGCATTATTCGCCTGG
TCTTCTCTTTACCTGAGATCCATCCTGGCTCCTGCCTCTCTCTACCGCCA
TAATCAACGCGCGTGCCCCCTTTGTGTCCATTTATCCATTCTATTCTCTC
CTTTTCTCCCACCTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCATTTATCTCCTGTGCTGAGCACAAAGACTAG
GATGTAGTGGGTGCTCCATAAATGTTTGTCAAATGAGTGATAGTATGGTT
AGCTCAATGAGAATTGATGGTGCCCTTTTCCACCTGTCATCCATCACTGT
GGTATGAAGTGGGGCCGGGAGGCCTTAAGCAGCACACACTTGAGAATCAA
AGGAGGGAGGCAGAGTGAGAATTAAGAAGAGCTACCCCTTATTGAGTGTT
TATTTGCTCTGGGCTTCTTTACTGTCTTAGTCTTTTTTCAATGTATGAGT
GCACTTAATCCTTAGATCAATCTGTTAAGACAGGTTCTGCTTATTCTCCT
TGTAAAAGTATAACGAAGTTCAATAACTTGCCCAAGGTCACACAGTAACA
GCACTTGAGATAAATACTGGTGCAGATTAGCCACTTATCTATACCTTTTT
GTCTGGTTCCTGCAAAGAAGCCCTGACACCTTGACGGATCCAACTTGTGT
AATGATTTAACTTGCCTTCTGTACGTCTGTGTCCTTATCCTATAGCACTT
AGGGCCGAGACTGACCTCAAACCTCCTGCTTCAGCCTTCTGAGCGCTAGG
ACTGCTATTGTTCGTTGCTGTCTAATTATTCGGAATTTGCCTTCAACTTC
TCTTTTTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_o15.g1 MSMg01no102_o15.g1 CHROMAT_FILE:
MSMg01no102_o15.g1 PHD_FILE: MSMg01no102_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:39 2005
         (248 letters)



>mm_chr11_4727393_4728040
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatttatctcctgtgctgagcacaaagactaggatgtagtgggtgctccataaatgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 atcatttatctcctgtgctgagcacaaagactaggatgtagtgggtgctcaataaatgtt 463

                                                                       
Query: 61  tgtcaaatgagtgatagtatggttagctcaatgagaattgatggtgcccttttccacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgtcaaatgagtgatagtatggttagctcaatgagaattgatggtgcccttttccacctg 403

                                                                       
Query: 121 tcatccatcactgtggtatgaagtggggccgggaggccttaagcagcacacacttgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcatccatcactgtggtatgaagtggggccgggaggccttaagcagcacacacttgagaa 343

                                                                       
Query: 181 tcaaaggagggaggcagagtgagaattaagaagagctaccccttattgagtgtttatttg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcaaaggagggaggcaaagtgagaattaagaagagctaccccttattgagtgtttatttg 283

                   
Query: 241 ctctgggc 248
           ||||||||
Sbjct: 282 ctctgggc 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)