BAC Information

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BAC

Clone NameMSMg01-103C05
Chromosome11 (Build37)
Map Location 73,068,620 - 73,068,858
singlet/doubletsinglet
Overlap geneTrpv1
Upstream geneSlc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl
Downstream geneTrpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103C05.T7 (MSMg01no103_c05.b1)MSMg01-103C05.TJ (MSMg01no103_c05.g1)
ACCAG318086AG318087
length722777
length of high quality
(start - end)
239 (84 - 322)---
definitionCHROMAT_FILE: MSMg01no103_c05.b1 PHD_FILE: MSMg01no103_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:57 2005CHROMAT_FILE: MSMg01no103_c05.g1 PHD_FILE: MSMg01no103_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGG
AATTCACAGCAATTTTCCGCTCACTAGCAAAAAAAAAAAAAAAAAAAGAG
GAGTCAGTGAATATGAAGGCAGACCAAAAGACATCACATTTGAGAAAGAA
AAAAAATAATTAAGGACAAAACAAACAAACCCTCCAACCTTTCTGGGACA
CTACTGCATAGCCTGACACCCAGCTTCTGAAACTGTGGACTGTGACCCCA
TATGGGGTTCCATAACAGAATGGCAGGGTTCTTGAAAATGTTGGCTACAT
CTTCTCAGGTTTCTGAACATGCAACATTCTTAAATGAATCTGAAATAAGA
TGGGCAGTGAGTCCAATGAGCCGCTGCCCCCCGCTCCTTGGGCACACAGA
TGTGTTTGAGGGCATATACCACTCACTAATCGTGGCCGAGTGTCTGCTGC
TGCTATGCAACCCATGTCTGATGTGAGGAAAGTCAAGATGGACTAAAGAC
CCCTCCTTCCCAGAGCCAAGCCCCTCCCTGCCATGGGCTCATCTAGCACA
CCTCATCTCGGCCTGATCTCAAGGAGAAACCCAGGGTGCGCTTGACACCC
TCCCAGTTGCCCGTGTCCTCCCTGATTGATGCCCTCTTTTCTGCTCCAGC
TAAGCCCACTTTATCCCCTCCACCCTTGCGCTTTAAGCAAACATGCTCTG
GCAAACCCCTGTTTCAATCTTG
NCCCGATGTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCCCCCGCAATTCTTAGCAAGCTGTAAATAGCAGGT
AGGAAAATTCTGTGTCTTGTTTTTTAGCACTTCCCAAGGTGAGACTGGAC
ACCATCTATTTTTGTGCAGTGGATGAAATGAGCACCCTGTATATCTTCTC
TTATTTTAACGATTATCCTTCAGCTCACATCGACTGGTTGGATGATTCCT
CCTGTTAGTATACTTACATTTTCATGCGTACTACGCTTTCGCTTCCGATT
TTCCCCCCGCTCTTGCTACTACGATCTCTGCACACTTCCCGCACACAACC
GCTACGCTACTTTATTCGCCCTTACCCTACCGATACGCACCGAAACCCAG
ACTTCGTCTAATTCCCATCTTGACCCACCTTTCGTTACTTCCCTAGTTTC
TTTTTCGCCCCCTTCTTTTTCCCTCCCTTTCGTCGTCCCGCCAAACCTTG
TTTTCCTTCGCGACTCTCTTGCTCACAAAACCCTCTCAATAGGCATCTTC
TCAACGCGAAACGCTCCTTTCTACCATAATCTTATCCTGTATTCTATTCC
CCTTTTCCCTCGTTTCCACCCCCTTCCTCCCCCTTTTTCACTTTTATCAG
ACTTCCCACACCCCCTTTCCTCCCCTTTTTGTATTGTGTTCACGTTGTCC
TCCGCACCTTTTCCCTCTCCCACCCCTCTCCCCCCTTTTTACACCCTTCC
TTTCTACTTTCTCCCCGCACTCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_c05.b1 MSMg01no103_c05.b1 CHROMAT_FILE:
MSMg01no103_c05.b1 PHD_FILE: MSMg01no103_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:57 2005
         (239 letters)



>mm_chr11_73068522_73069160
          Length = 639

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaaaaa-aaaagaggagtcagtgaatatgaaggcagaccaaaagacatcacatttg 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaaaaaaaagaaaagaggagtcagtgaatatgaaggcagaccaaaagacatcacatttg 278

                                                                       
Query: 60  agaaagaaaaaaaataattaaggacaaaacaaacaaaccctccaacctttctgggacact 119
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 277 agaaag-aaaaaaataattaaggacaaaacaaacaaaccctacaacctttctgggacact 219

                                                                       
Query: 120 actgcatagcctgacacccagcttctgaaactgtggactgtgaccccatatggggttcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 actgcatagcctgacacccagcttctgaaactgtggactgtgaccccatatggggttcca 159

                                                                       
Query: 180 taacagaatggcagggttcttgaaaatgttggctacatcttctcaggtttctgaacatgc 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 taacagaatggcggggttcttgaaaatgttggctacatcttctcaggtttctgaacatgc 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)