ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGTCAGATACCAAAAGGATCCTGGTTCCTTTTTGCCTCCCCTC
TCCTCTCCTCCTGGTAAATAGCTCTTTAGTCAAACTCAGCCCAAAGCTAC
AGGAACAGGGGAAGGTCAAGAAATATGCCAGGTGAATCTGAAGGGGCTAA
GAAAAAAAAAGCCCATGTTCTTTATTTTACAGTAGATCTCTGTCCTGGTT
AGTTTTAACTTGACAGAGCCTAGAACCTCAACCGAGGCCTTGCCTAAATC
ATATTGGCCTGTGGGCATGTCTAGAAGGGATTGTCTTGGATAATAATTGG
ACCTAGCACACTGAGGGTAACACTATTTCTTGGGCAGGTGGTTCTGAGCA
TATAATAAGCTAGCTGACTAAAAAAAGATATAAATCTATCCTAGAGCCAG
TTAGCCAGCAGCATCCTCCATGACTTCTGCTGTACTTCTTGACTCAAGTA
AGTTCTTTGGTTAGAGATAATACTGTGTGGAAAAGCAAGCAGGTACACCT
TTAAGTTCCTGATGTAACTTTCCACAGCGATGATCTGTGAGGGGGATTTG
CCAGATGAATAAATCCTTCCTTCCTCTAAGTTGCTCTTGGTAAGGGTAAC
TTATTACAGCAACAGAATGATCTTTCTCTTTAACAGTACTAGTTTCTACT
TATA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTTAGGCAAGATCTTCAGTTCAAGTTA
TGATAATCAAGGACTGAACATATTGTGGTTTCAAAACTTCAATAAGTACA
CAAATCACCCTGTGATCTTGAAAAGACAGACTTTGATTAATCTCAGGGGG
AAACTGAGACAATCCTTTTCTAACAAATTCATACTTAATAACCACACTTC
ATAGCCATGTACTTTGGTTTAAAAGGACAAATAGGAAGGTAGTATTTGGG
CTAAAAAGTATCAGAAAAAGATTTTTTTAAACGTTTTCGTAAAGAGCTAA
TTCAATAGTAGCTCCACTAACAGGAATGACAAGGATGTGTGTGATGTGTA
TAAAGTGCCATTTTCAGAAAAACATGTTTTCTGGGTTTTGTTTTTCTTAA
GATTCTTATTTATTTTAAAGCTGGGTGTGGTATCTTTAGTCTTAGCACTC
AGGAAGCAGAGTCCAGCTGTGAGTTTGAACCCAGCTTGGTGTACCAGATC
ATCAAGAGCTACATAGTAAGACATGTCTCAAAACAAACAAAACAACAACA
AAAAGATTTTGTTTATTTTCTAATACTATGTATAGGTACATGGAATTACA
TGGTATACAGATCCCAGAATAGGGCACTGGCTCCCCTGGAGCAGGCAGAT
GTGCGCTGCCCAATGTGGG

Query= MSMg01no104_a19.b1 MSMg01no104_a19.b1 CHROMAT_FILE:
MSMg01no104_a19.b1 PHD_FILE: MSMg01no104_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:10 2005
         (500 letters)



>mm_chr11_30596836_30597735
          Length = 900

 Score =  951 bits (492), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcctggttcctttttgcctcccctctcctctcctcctggtaaatagctctttagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcctggttcctttttgcctcccctctcctctcctcctggtaaatagctctttagtcaa 260

                                                                       
Query: 61  actcagcccaaagctacaggaacaggggaaggtcaagaaatatgccaggtgaatctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagcccaaagctacaggaacaggggaaggtcaagaaatatgccaggtgaatctgaag 320

                                                                       
Query: 121 gggctaagaaaaaaaaagcccatgttctttattttacagtagatctctgtcctggttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctaagaaaaaaaaagcccatgttctttattttacagtagatctctgtcctggttagt 380

                                                                       
Query: 181 tttaacttgacagagcctagaacctcaaccgaggccttgcctaaatcatattggcctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaacttgacagagcctagaacctcaaccgaggccttgcctaaatcatattggcctgtg 440

                                                                       
Query: 241 ggcatgtctagaagggattgtcttggataataattggacctagcacactgagggtaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatgtctagaagggattgtcttggataataattggacctagcacactgagggtaacac 500

                                                                       
Query: 301 tatttcttgggcaggtggttctgagcatataataagctagctgactaaaaaaagatataa 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tatttcttgggcaggtggttctgagcatataaaaagctagctgactaaaaaaagatataa 560

                                                                       
Query: 361 atctatcctagagccagttagccagcagcatcctccatgacttctgctgtacttcttgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctatcctagagccagttagccagcagcatcctccatgacttctgctgtacttcttgac 620

                                                                       
Query: 421 tcaagtaagttctttggttagagataatactgtgtggaaaagcaagcaggtacaccttta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tcaagtaagttctttggttagagataatactgtgtggaaaagcaagcaggcacaccttta 680

                               
Query: 481 agttcctgatgtaactttcc 500
           ||||||||||||||||||||
Sbjct: 681 agttcctgatgtaactttcc 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no104_a19.g1 MSMg01no104_a19.g1 CHROMAT_FILE:
MSMg01no104_a19.g1 PHD_FILE: MSMg01no104_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:10 2005
         (640 letters)



>mm_chr11_30749463_30750502
          Length = 1040

 Score = 1237 bits (640), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttaggcaagatcttcagttcaagttatgataatcaaggactgaacatattgtggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 actttaggcaagatcttcagttcaagttatgataatcaaggactgaacatattgtggttt 697

                                                                       
Query: 61  caaaacttcaataagtacacaaatcaccctgtgatcttgaaaagacagactttgattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caaaacttcaataagtacacaaatcaccctgtgatcttgaaaagacagactttgattaat 637

                                                                       
Query: 121 ctcagggggaaactgagacaatccttttctaacaaattcatacttaataaccacacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctcagggggaaactgagacaatccttttctaacaaattcatacttaataaccacacttca 577

                                                                       
Query: 181 tagccatgtactttggtttaaaaggacaaataggaaggtagtatttgggctaaaaagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tagccatgtactttggtttaaaaggacaaataggaaggtagtatttgggctaaaaagtat 517

                                                                       
Query: 241 cagaaaaagatttttttaaacgttttcgtaaagagctaattcaatagtagctccactaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagaaaaagatttttttaaacgttttcgtaaagagctaattcaatagtagctccactaac 457

                                                                       
Query: 301 aggaatgacaaggatgtgtgtgatgtgtataaagtgccattttcagaaaaacatgttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggaatgacaaggatgtgtgtgatgtgtataaagtgccattttcagaaaaacatgttttc 397

                                                                       
Query: 361 tgggttttgtttttcttaagattcttatttattttaaagctgggtgtggtatctttagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgggttttgtttttcttaagattcttatttattttaaagctgggtgtggtatctttagtc 337

                                                                       
Query: 421 ttagcactcaggaagcagagtccagctgtgagtttgaacccagcttggtgtaccagatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttagcactcaggaagcagagtccagctgtgagtttgaacccagcttggtgtaccagatca 277

                                                                       
Query: 481 tcaagagctacatagtaagacatgtctcaaaacaaacaaaacaacaacaaaaagattttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcaagagctacatagtaagacatgtctcaaaacaaacaaaacaacaacaaaaagattttg 217

                                                                       
Query: 541 tttattttctaatactatgtataggtacatggaattacatggtatacagatcccagaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tttattttctaatactatgtataggtacatggaattacatggtatacagatcccagaata 157

                                                   
Query: 601 gggcactggctcccctggagcaggcagatgtgcgctgccc 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gggcactggctcccctggagcaggcagatgtgcgctgccc 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)