BAC Information

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BAC

Clone NameMSMg01-104G01
Chromosome11 (Build37)
Map Location 76,486,490 - 76,634,713
singlet/doubletdoublet
Overlap geneA830053O21Rik, Tusc5, Gosr1, Cpd
Upstream geneMyo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483
Downstream geneTmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G01.T7 (MSMg01no104_g01.b1)MSMg01-104G01.TJ (MSMg01no104_g01.g1)
ACCAG319005AG319006
length726714
length of high quality
(start - end)
193 (80 - 272)295 (79 - 373)
definitionCHROMAT_FILE: MSMg01no104_g01.b1 PHD_FILE: MSMg01no104_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:37 2005CHROMAT_FILE: MSMg01no104_g01.g1 PHD_FILE: MSMg01no104_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,634,521 - 76,634,713)(76,486,490 - 76,486,784)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATACGCGGAA
TTCACCCCCAGATTTTCCACGCACCAGGTAAGCTCTCTCCAGTGACCTAT
GTCCCAAGCCCTTCGTCAGTCTTTAAATATGCTCATGTATCATCTGTTTT
TCCAGGCCCTTTGGGGTCCTTCTTACTTTTAACGTAGCTGTGCCACTACA
TGAGGTGACCTGATCTCCGGCACTGAATGGTAATTCCTTTAGACAATTTC
TTTTAGTCATCTACTCCATAACTCCAGGTTGTAGTTGTCAGCTGTTGCTG
TTGTTTTGTTCTGTTTGGTCCGTAACATTTTCCTTACTTATATAATCACT
GGTATGTTTGTGTTTAAAAACAATTTTAATTATCCTTCTTACATCTCTGG
CCTTGTGAGTTTGCGTTCCCAGCTATATTCCGACATTACATGCTGCGTGC
ATGCCACACCGCTTTCATATTTATGATTTTTCTTCTTCCGCCTTCTGATT
CGATATAAACAGTAACCCTGTGTGTGTGTCTGTGTCGCCATCCTGCAATG
TTACTCTATCCCTCCCACACCCCAATTTTTTTTCTTTCTAAACATTTCAT
ATATCCCATATACCCCTTACCTCTTCCCTTCCTTCTACCCCTCATTTTAT
CCCCATACCCCACTTCCTACCCTTCTTCCTTCCTTCTTTTTTTTATTTCT
TCTACATTTTCTTTTACTTCCTCCTT
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTTCCGCGGTCAGCGCC
GTCTCCTATAGCGCCTAGCCTAACGCGCAGGGACATCGCCAGCCCCTTAG
TGCCGCCTACACCGCGCTGCGCTTCGTGTTCCCCGTACTCGCACTTGGGG
CGGCCTAGGGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCTCCGGGGG
AAACTGGCGTCAATGTCCTGGGGCTCCCCCTGTTCGACCGGTTTCGTGGC
GGTGGGGTTCTGGGCTGGGCTACCAGCACTCTTGATCGTGCCACCCAGAG
GGAAGCCGGCTTGGCCCGAGTGACTGCAAAAGAGAATATGTCAGAAGTCA
TCCTGGACAGAGCACAATTGAATGGGGTTGTGACTTGCGTGGCAAAGGAG
GATGTCTTACCATGTGGAAGGAACTACCGGTCTCAGGGCAGCCTTCCCTC
ATCCCAGTCTGTGGTGGTGAATTACGAAGGCAGATTTTACGCCTGGACTT
GTTCAACCCCTTGTTCCTGCACAGTGTCCTTTGCTTTCCTTTGCTTCTGA
GCCCTCCTTTTCCCTTGCCTCCTTTGTAAATTGCCTACTTGTGGCACTGT
GTTGCTTCGCAACTGCTTTGATCTGACGCCCTATGCTGTTGTCCTTCTCT
CCCGTTTTTTCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g01.b1 MSMg01no104_g01.b1 CHROMAT_FILE:
MSMg01no104_g01.b1 PHD_FILE: MSMg01no104_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:37 2005
         (193 letters)



>mm_chr11_76634321_76634913
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctctctccagtgacctatgtcccaagcccttcgtcagtctttaaatatgctcatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagctctctccagtgacctatgtcccaagcccttcgtcagtctttaaatatgctcatgta 334

                                                                       
Query: 61  tcatctgtttttccaggccctttggggtccttcttacttttaacgtagctgtgccactac 120
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 gcatctgtttttccaggccctttggggtccttcttacttttaacatagctgtgccactac 274

                                                                       
Query: 121 atgaggtgacctgatctccggcactgaatggtaattcctttagacaatttcttttagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atgaggtgacctgatctccggcactgaatggtaattcctttagacaatttcttttagtca 214

                        
Query: 181 tctactccataac 193
           |||||||||||||
Sbjct: 213 tctactccataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no104_g01.g1 MSMg01no104_g01.g1 CHROMAT_FILE:
MSMg01no104_g01.g1 PHD_FILE: MSMg01no104_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:37 2005
         (295 letters)



>mm_chr11_76486290_76486984
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtgttccgcggtcagcgccgtctcctatagcgcctagcctaacgcgcagggacatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtgttccgcggtcagcgccgtctcctatagcgcctagcctaacgcgcagggacatcg 260

                                                                       
Query: 61  ccagccccttagtgccgcctacaccgcgctgcgcttcgtgttccccgtactcgcacttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ccagccccttagtgccgcctacaccgcgctgcgcttcgtgttccccgcactcgcacttgg 320

                                                                       
Query: 121 ggcggcctagggtgatggccgaagtgcccaatttggcccaaacctccgggggaaactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcggcctagggtgatggccgaagtgcccaatttggcccaaacctccgggggaaactggc 380

                                                                       
Query: 181 gtcaatgtcctggggctccccctgttcgaccggtttcgtggcggtggggttctgggctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaatgtcctggggctccccctgttcgaccggtttcgtggcggtggggttctgggctgg 440

                                                                  
Query: 241 gctaccagcactcttgatcgtgccacccagagggaagccggcttggcccgagtga 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaccagcactcttgatcgtgccacccagagggaagccggcttggcccgagtga 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)