Query= MSMg01no105_b13.b1 MSMg01no105_b13.b1 CHROMAT_FILE:
MSMg01no105_b13.b1 PHD_FILE: MSMg01no105_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:36 2005
(462 letters)
>mm_chr11_51013010_51013872
Length = 863
Score = 762 bits (394), Expect = 0.0
Identities = 454/490 (92%), Gaps = 29/490 (5%)
Strand = Plus / Minus
Query: 1 attgggtgtggaccatccattgcagaattattttgttgctactcacaagctcacaaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 513 attgggtgtggaccatccattgcagaattattttgttgctactcacaagcttaaaaattt 454
Query: 61 ttatagcctggcacagatgtgcctgtccattccaaaaataggattcactgggcagaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttatagcctggcacagatgtgcctgtccattccaaaaataggattcactgggcagaactt 394
Query: 121 attctttctgtcatatacatt-gagatttctcagaagactgtcatatcaggcagaatctg 179
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attctttgtgtcatatac-ttcgagatttctcagaagactgtcatatcaggcagaatctg 335
Query: 180 tgggtagcacctaccactgattaccagagccacccgtgtaccaaaacctcctacat-ggg 238
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 334 tgggtagcaactaccactgattaccagagccacccgtgtaccaaaacctcctacatgggg 275
Query: 239 gctataaatgtagagtctagtcagagcatggcattacctagccagagcagaggaagccc- 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gctataaatgtagagtctagtcagagcatggcattacctagccagagcagaggaagccct 215
Query: 298 ------------tc-------------cagtctgcccttctggagtatttcttccaatat 332
|| ||||||| |||||||||||||||||||||||||
Sbjct: 214 tcagtctgtccttccaaggaagcccttcagtctgtccttctggagtatttcttccaatat 155
Query: 333 acaccacggttttacctttcagaacaactcctggaatttatgtaccagctgcctgctttt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 acaccacggttttacctttcagaacaactcctggaatttatgtaccagctgcctgctttt 95
Query: 393 gccaacttgacgatgttggtgagacaggagctctgtactgtgatggtgctcacggtggat 452
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 94 gccaacttgacgatgttggtgagacaggagctctgtactgtgatggtgttcacggtggaa 35
Query: 453 agagctggaa 462
||||||||||
Sbjct: 34 agagctggaa 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_b13.g1 MSMg01no105_b13.g1 CHROMAT_FILE:
MSMg01no105_b13.g1 PHD_FILE: MSMg01no105_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:36 2005
(426 letters)
>mm_chr11_50954188_50955013
Length = 826
Score = 729 bits (377), Expect = 0.0
Identities = 413/425 (97%), Gaps = 3/425 (0%)
Strand = Plus / Plus
Query: 3 ctaaattttaag-tacaaatacaacataaaaataaattatgttcctaaagaaaaccatga 61
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 ctaaattttaagatacaaatacaacagaaaaataaattatgttcctaaagaaaaccatga 262
Query: 62 ggaaaggaaaggattccactgacaatagtaataaaataaatacaacacataagaagaacc 121
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaaaggaaagtattccactgataatagtaataaaataaatacaacacataagaagaacc 322
Query: 122 ttaactaaggaaatcaaagagccctacattgaacatctaaaatcttgtacttttgtttag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaactaaggaaatcaaagagccctacattgaacatctaaaatcttgtacttttgtttag 382
Query: 182 cttttagcacaacagtctctaaagaaaagctattttttaatgtttgccatatttccttat 241
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct: 383 cttttagcacaacagtctgtaaagaaaagcaattttt-aatgtttgccatatttccttag 441
Query: 242 cttatacaaacgctcttggagttcaggattctttgttaaaaaataaattatctgggtagc 301
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 cttatacaaatgctcttggagttcaggattctttgttaaaaaataaattat-tgggtagc 500
Query: 302 aaaggtggttcagcagttttcgtcactcttgcaaaggacccacataaagttcccagcacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggtggttcagcagttttcgtcactcttgcaaaggacccacataaagttcccagcacc 560
Query: 362 cacatggtagctcacagccgtgagcaactctagttccagaagatctgacaccttcctctg 421
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 cacatggcagctcacagccgtgagcaactctagttccagaagatctgacaccttcttctg 620
Query: 422 gcctc 426
|||||
Sbjct: 621 gcctc 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
