Query= MSMg01no106_i10.b1 MSMg01no106_i10.b1 CHROMAT_FILE:
MSMg01no106_i10.b1 PHD_FILE: MSMg01no106_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:05 2005
(540 letters)
>mm_chr11_57383425_57384364
Length = 940
Score = 828 bits (428), Expect = 0.0
Identities = 437/440 (99%)
Strand = Plus / Minus
Query: 1 tgtacttgacagcggaaagtaaatcagatgacttctcggactggtacccagggacacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtacttgacagcggaaagtaaatcagatgacttctcggactggtacccagggacacttg 381
Query: 61 gacacacaaacatgttcccatgcacacaggacttgagttatttaccaagcttcagagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacacacaaacatgttcccatgcacacaggacttgagttatttaccaagcttcagagggt 321
Query: 121 gccaggtgttgggaacataaagagatgaccattcccaatgacagtatgaggtcacagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gccaggtgttgggaacataaagagatgaccattcccaatgacagtatgaggtcacagcac 261
Query: 181 ttggccaggtggctcctgttctctggatctcaaaggttagcattttttggtagtgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttggccaggtggctcctgttctctggatctcaaaggttagcattttttggtagtgtgtgt 201
Query: 241 tgatttgaatgtaaaatatcccccatagtttcttgtgtttaggggcttatcctccggcta 300
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 200 tgatatgaatgtaaaatatcccgcatagtttcttgtgtttaggggcttagcctccggcta 141
Query: 301 gttgcactgttttggaaggttgtagaacttttgggagctagagtctgagaaagttacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gttgcactgttttggaaggttgtagaacttttgggagctagagtctgagaaagttacttt 81
Query: 361 tatttgtcagatgcaattgtctactcagaggcttactgctgaataaactcaccctttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tatttgtcagatgcaattgtctactcagaggcttactgctgaataaactcaccctttcaa 21
Query: 421 gttctttctgagatctggct 440
||||||||||||||||||||
Sbjct: 20 gttctttctgagatctggct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_i10.g1 MSMg01no106_i10.g1 CHROMAT_FILE:
MSMg01no106_i10.g1 PHD_FILE: MSMg01no106_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:06 2005
(469 letters)
>mm_chr11_57253315_57254178
Length = 864
Score = 671 bits (347), Expect = 0.0
Identities = 426/469 (90%), Gaps = 27/469 (5%)
Strand = Plus / Plus
Query: 1 acacatcatggagttgaatagccagagagaatgaaaccaaatgtatggaagggaatatgt 60
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acacatcatggagttggatagccagagagaatgaaaccaaatgtgtggaagggaatatgt 260
Query: 61 ctggagacaatgaaggcagaggctggtggaaaggcaagcttttggcctcccaaaagatgc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctggagacaatgaaggcagaggctggtggaaagacaagcttttggcctcccaaaagatgc 320
Query: 121 tgacactgtactatttgagtaggaccgccacctcctctttcctgtgtaaatttcccactt 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tgacactgtactatttgaataggaccgccacctcctctttcctgtgtaaatt-----ctt 375
Query: 181 ctaatatttttctttagaacatgtgattcaacatggaggtggcattgggcctccatgtgt 240
|||||||||||||||||||||||| |||||||||| |||
Sbjct: 376 ctaatatttttctttagaacatgtaattcaacatg----------------------tgt 413
Query: 241 catcttcaccagactaatgaagcactgttccagtatttatggacgatgtttgaagtagga 300
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 414 catcttcaccagactaatgaagcactgttccagtatttatggatgatggttgaagtagga 473
Query: 301 gctacaggtggtttattcaaaggaaaggcccaggctccatacgtaaggcacttgcctcac 360
|||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||
Sbjct: 474 gctacaggtgttttattcacaggaaagggccaggctccataagtaaggcacttgcctcag 533
Query: 361 aagcaggaagagctgagttctatccccagaacccaagaaaggggagaaagataaaatggt 420
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 534 aagcagaaagagctgagttctatccccagaacccaagaaatgggagaaagataaaatggt 593
Query: 421 atatgcttctcatcccagcaaaggccagatgagagacaggctgattctg 469
|| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgtgcttctaatcccagcaaaggccagatgagagacaggctgattctg 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 864
Length adjustment: 10
Effective length of query: 459
Effective length of database: 854
Effective search space: 391986
Effective search space used: 391986
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
