BAC Information

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BAC

Clone NameMSMg01-107O16
Chromosome11 (Build37)
Map Location 108,241,278 - 108,241,578
singlet/doubletsinglet
Overlap genenone
Upstream genePitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107O16.T7 (MSMg01no107_o16.b1)MSMg01-107O16.TJ (MSMg01no107_o16.g1)
ACCAG321509AG321510
length1,2811,290
length of high quality
(start - end)
303 (94 - 396)263 (141 - 403)
definitionCHROMAT_FILE: MSMg01no107_o16.b1 PHD_FILE: MSMg01no107_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:28 2005CHROMAT_FILE: MSMg01no107_o16.g1 PHD_FILE: MSMg01no107_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAAATCTTNNNCAAACATTGGGCGCTAAGACTCACTATGGGAGAGGAT
CCGCGGAATTCACATCTCATACCTACCCCTTAAGAACACTGGCTTCCAGG
GAGCTAGGATGAGGGCCCCTTAAACCACCCCCACAATGACACACTTCTTC
CAACAAGGCCACACCTAATAGTGCCACTCCCTGGACCAAGCATATTCAAA
CCATCACAGTGACTTTAAAAAAAAAATTTTATCCACAAGACCAAGAACCT
GCAAAAGAGACTCTGTGCCCTTTAGTGACACTCTGGTCAGTTTTAAATGT
ATTATTATGATTCAAATACTGTAAAACAAGGGTGTGAGATTTTTATGCTT
ATCAAAAAAAGAGAAACTTTATAAAAGCATCTCAAGTGTTATCTACGTGT
GGAAGAATTTTTATTGTGGCACAGAGGAATTTCTCCGTCCCTCACTCACC
CAGTGCGTGTTTTTTTTTCCCCCCGCCCGCCCACCTGAATACGACCACAA
AAAAAAGAGGGATTTTGACTTGCTTAAAAATCTGACTTGGAAGCAATTAA
AGAACTTTACTGCGTGGAACCCCCCATCTTTTACCTCACGCTTAGAACCC
CTATGTAGATGGGCTCTTGAGGTAAGAGATCTCATAATTATCCTTGTCTT
GTATGGTAGGAATCACAACTTTCTCACTACCCTTTATCATTCTTAACCGG
CACTTTCCGGTCCAACTACTCAAGGTAACTAACATGTTTCTTTACTTTTT
TCTCTTCCAACCTTCTGCAGACACTCTAAGAAATTTCAATCCCTCCTCTT
TCAAATGCACCCTCAATTCCCAAAACCTAATAACCCCGCGCTCTAATACT
CATTCCCCCTCTTACAACTTCAGACATTTCTTCTCTCTCTATATACTATA
ACCATTTTTTTCTTTACATTTTTCTATTAACACTTAATTTGCTATTTATT
TCTTCTTTTACAACTCAAAACCCCGTTTTCTACATCCCAATACATTATCT
TTTTTCTTATTTCTCCCCCTTTTTTTTTTTTTTAATCCCCCCCCCCCCCC
CCCCTTATTGTTTTAAATAAATTTCTCTTATCTCTCACCATCCTTCCTAC
TTTTTATCTATTCACATCATTTAACTCCCCCCATACTAATATTTTGGGAT
CTTTCTCCATACTCTCTTACACATAGTCACTACTACTTATACTTCAATAT
CTATTAGACTACTTATACCATCTTCTTTAAAATCTAATCTCTCTGACTGC
TACTTCTACTTTCGTCATCTTCATAATCCTA
CGAAGTCTTNNNNGAAACATGTGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTAACTGCCAAATACCAA
ATGGCTGAGAAGCACCTGACCCCTTGAACCCCATCTTTAATCATCAGAGA
AATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGTTAAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGTGAGGAA
ACAGGAACACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGG
AGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACC
GGTAAGAAGGATTTTTGCTCCACTATGTTCATAGCAGCCTTACCAGAAGC
TGGAAAGAACCCTTATTTCTCCTCCCCCACGAATGGATACCCCCCCCGTC
AAAACAAGGAGGGGGTGGAGTACTACTCAGCTATTAAAAGGAATGAATTT
ATGAAATTCCTAGGCAAATGGTTGGACATGGAGGGCATCTTCCTGAGTGA
GGCAATACAATCACAAAAGAACTCCAATGATATGTACTCACTGATACATG
GATATTATCCCACAACTTTAGTATACCCCGAGATATATCGACACCTTTTG
TTACTACACTTGAAACTGAACAAAACTGAAGACCAACACCGTGCACCCCT
TTGCCCCCTTCTTAAATTTGCAATACATTCACCCCTGCAAGGCAGTTACC
TTAAACCAGATTGTCAGCTCTAAACCAATACGCTGGTTCCTCCTACACAC
CGCCATATTCCACGTATTCTCTCCCATCCTTACTCCCCCCTATAGTATGA
ACACCATTTGCTTATACCAATCTAATCTTTGGCCTTTAAAAACCCCTTAA
AATTTCCTGTTCTCTTTTGTATACTATTTCGTGTCCCCGTTCTTCACCCC
TACACTTACATCTCTCTAATTCTTCTTATTTCATGGAATTCAACGTTCCC
CCCTTTGTGCCGTTCTTTTCTCTTCTTTTTCCCTACTCTCTCACAGTACA
ATCTCTCATCCTCGTTATTTCGTCACCACTCTTAATTAATACTCACCTTT
GTAACCCCATAATCCCCCATTATTCTTATTCGTCATTTGGTCCTTCATTA
AATCCGCCTCTTCTTCTTTCCACAATCTGGTCCCTACGTCTACACTCCCT
CTCTTCAACATTCCACTCGTCTTCTTCTTCCTCACCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_o16.b1 MSMg01no107_o16.b1 CHROMAT_FILE:
MSMg01no107_o16.b1 PHD_FILE: MSMg01no107_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:28 2005
         (303 letters)



>mm_chr11_108241078_108241781
          Length = 704

 Score =  503 bits (260), Expect = e-147
 Identities = 292/304 (96%), Gaps = 7/304 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccagggagctaggatgagggccccttaaa--ccacccccacaatgacacacttcttcc 58
           ||||||||||||||||||||||   ||||||  |||| ||||||||||||||||||||||
Sbjct: 201 ttccagggagctaggatgaggg--tcttaaagcccacacccacaatgacacacttcttcc 258

                                                                       
Query: 59  aacaaggccacacctaatagtgccactccctggaccaagcatattcaaaccatcacagtg 118
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aacaaggccacacttattagtgccactccctggaccaagcatattcaaaccatcacagtg 318

                                                                       
Query: 119 actttaaaaaaaa-aattttatccacaagaccaagaacctgcaaaagagactctgtgccc 177
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actttaaaaaaaataattt-atccacaagaccaagaacctgcaaaagagactctgtgccc 377

                                                                       
Query: 178 tttagtgacactctggtcagttttaaatgtattattatgattcaaatactgtaaaacaag 237
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tttagtgacactctggtcagttttaaatgtatgattatgattcaaatactgtaaaacaag 437

                                                                       
Query: 238 ggtgtgagatttttatgcttatcaaaaaaa-gagaaactttataaaagcatctcaagtgt 296
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 ggtgtgagatttttatgcttatcaaaaaaaagagaaactttataaaagcatctcaagtgt 497

               
Query: 297 tatc 300
           ||||
Sbjct: 498 tatc 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 704
Length adjustment: 9
Effective length of query: 294
Effective length of database: 695
Effective search space:   204330
Effective search space used:   204330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)