Query= MSMg01no108_f18.b1 MSMg01no108_f18.b1 CHROMAT_FILE:
MSMg01no108_f18.b1 PHD_FILE: MSMg01no108_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:12 2005
(586 letters)
>mm_chr11_92711280_92712265
Length = 986
Score = 1110 bits (574), Expect = 0.0
Identities = 583/586 (99%)
Strand = Plus / Minus
Query: 1 attccaccttgaacttcacccatcactaagtgcttgtcacatagcagactgtcactaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 attccaccttgaacttcacccatcactaagtgcttgtcacatagcagactgtcactaaat 796
Query: 61 aattgttgaggagggagaatagttgcttctttcatccatcaactgagaatctcagctcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aattgttgaggagggagaatagttgcttctttcatccatcaactgagaatctcagctcgg 736
Query: 121 gtccctatggctatttgttcatgcttactattccccatgcctattagtactctatgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtccctatggctatttgttcatgcttactattccccatgcctattagtactctatgtggt 676
Query: 181 ccacaaggctattttagccaagatagatgtttgcacagatttttccctgtcctggcaagg 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 675 ccacaaggctattttagccaagatagatgtttgcacagaattttccctgtcctggcaagg 616
Query: 241 gcaagagtggacagtgctattatccattctggatcaaaaccagtagttcctctttgctta 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 gcaagagtggacagtgctattatccattctggatcaaaaccaggagttcctctttgctta 556
Query: 301 ggcttcagggctaaatcttcctctacatagaaatgtatcatgttgatgctcctgatgggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggcttcagggctaaatcttcctctacatagaaatgtatcatgttgatgctcctgatgggc 496
Query: 361 aagctgcctgcagcttcattgagttatcaatgtttctacttgatctattgacagtggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagctgcctgcagcttcattgagttatcaatgtttctacttgatctattgacagtggagg 436
Query: 421 cttgaaagtaaacagctctgccaactccaaatagctggtttgaggcctggcaggcaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttgaaagtaaacagctctgccaactccaaatagctggtttgaggcctggcaggcaggaa 376
Query: 481 agctttgcacaaagctaagagctggcatagagattgaggcttgcagtgagtttatgctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agctttgcacaaagctaagagctggcatagagattgaggcttgcagtgagtttatgctgt 316
Query: 541 tgcatgcaggaggaaggaatttcattaaaaagtctgtattctaaaa 586
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgcatgtaggaggaaggaatttcattaaaaagtctgtattctaaaa 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_f18.g1 MSMg01no108_f18.g1 CHROMAT_FILE:
MSMg01no108_f18.g1 PHD_FILE: MSMg01no108_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:12 2005
(512 letters)
>mm_chr11_92575523_92576440
Length = 918
Score = 917 bits (474), Expect = 0.0
Identities = 505/518 (97%), Gaps = 6/518 (1%)
Strand = Plus / Plus
Query: 1 tttaatttgacgaatatataattgctgaatataaaattgaccaatttaaaaaaatgaaaa 60
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtttgatgaatatatgattgctgaatataaaattgaccaatttaaaaaaatgaaaa 260
Query: 61 cttgaaatttaaagcagaggaaaaggtcatgggttcacattggtcaagaagagtcagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaaatttaaagcagaggaaaaggtcatgggttcacattggtcaagaagagtcagtga 320
Query: 121 cttccttttcaacaagcagatgaataataaaacatagacgaagttgcccaatcatttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccttttcaacaagcagatgaataataaaacatagacgaagttgcccaatcatttcag 380
Query: 181 actgtgtggaagctatgaggcctt----tgtcagatgtaatttaattgcgtgtcacatcc 236
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 actgtgtggaagctatgaggccttcctttgtcagatgtaatttaattgcgtgtcacatcc 440
Query: 237 tcccagctgtcatgctggcttgaatgtatcttgtcagattatattttaaggcattatctg 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctagctgtcatgctggcttgaatgtatcttgtcagattatattttaaggcattatctg 500
Query: 297 gtgactgaattagttggtgccacaacatgaaaatacagcttacagtatggaaaaaataaa 356
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 501 gtgactgaattagttggtgccacaacataaaaatacagcttacagtaaggaaaaaataaa 560
Query: 357 aaata--aaaatctagcaatttattaaagtaaaacttgctaaccaaaagctcaactccat 414
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaacaaaaatctagcaatttattaaagtaaaacttgctaaccaaaagctcaactccat 620
Query: 415 aatgaagtgtgccagcctcatcttaacattgtgaaattagacaaatgtgttttaaaaatg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaagtgtgccagcctcatcttaacattgtgaaattagacaaatgtgttttaaaaatg 680
Query: 475 tgctggggaattccagcacatgtgccgcggtttgataa 512
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctggggaattccagcacatgtgccgcggtttgataa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 918
Length adjustment: 10
Effective length of query: 502
Effective length of database: 908
Effective search space: 455816
Effective search space used: 455816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
