BAC Information

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BAC

Clone NameMSMg01-108M17
Chromosome11 (Build37)
Map Location 86,014,747 - 86,015,164
singlet/doubletsinglet
Overlap genenone
Upstream geneAppbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803
Downstream geneInts2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108M17.T7 (MSMg01no108_m17.b1)MSMg01-108M17.TJ (MSMg01no108_m17.g1)
ACCAG322148AG322149
length794719
length of high quality
(start - end)
59 (42 - 100)418 (120 - 537)
definitionCHROMAT_FILE: MSMg01no108_m17.b1 PHD_FILE: MSMg01no108_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:46 2005CHROMAT_FILE: MSMg01no108_m17.g1 PHD_FILE: MSMg01no108_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
CTAAGGTATGACATGTGTGTCTGAGAGGGGGAAGAGGAGGAAGGGAGGGT
GGGGTTCCTCACTTCTCCACCCTTTTTGTNTTTTTGCCCCATTATACCAT
ATAGCCCCCCTCCGCCCTTCACCCTTACTCTTTTACCAATCCCCCCTATA
CTTCACTCAAACACTTACACTCACCAACTCATCATAACTCATCCCCCATC
CTCTTATCTCTCATACCTCCCATCACCCCTTCATCCACTCCTCCTCCTCC
TCATCACTCCCTCCTCATTTTTCTCTCCACTCTACTTCCCCCCTACTCTC
TCACTATTATATTTATTTTATTACCCCCCTTACCCCAAAGCTATTCCCCC
CTTCATTCCATTATGCCTAACTATCCCCCTTACCACATCTACCATAATCT
TCCCTCATACCCCCTCATTTATACCCTTACCCCTTCCTTCCCTTCTTTCC
CATTATATTCCCCCTTCCCCTCCCTCACCCCTTTTCCCCCATCCACCCTA
TTTACTCCCTCTTTCCCCCCTGTCCCCCCCCTTTTTTTCCCTTCACCCTT
TTCCCCTTCGCCCATCCACCTTCTCTTTCTCCCCATCCCTCCCCCCCTAC
ACCTACCCACTTCCCCCTATACCCCCTTCATACCCCGCTTCCTCCCCTCT
CATCCCCCTTTTACCACTTTTCCCCGCCTTCCCTATCCTTGCTTTCACAC
CCCTCTCTTTCCCCCCCTTTCCTTCCCCCTCTCTCCCACCCTCN
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCCTCCCGCCCCTCGGTTCCCAGTCAGCCA
ATCACACAGCCAGACCGGAAAAGGAAACAGCCAATCATCGTACGAGGCCA
ACGCTGTACCGCCCAATGGGAGCCCGCGAAGTAAAATCAACCCTCGAGTA
CTTGGCGGGACCGGAAGACGAGCACCGCCCCTCCCCCAAACCCCACCCCG
CGAAAAAGACCGGGACAAGTTCCGCACATTTGCTTGAAGGAAAAAAAAAA
ATTCTTGTACTGTGAGACTTTAAGAAGCACAAAATGGGCGCTAGACGGGT
CTTACATTTGGTGCATTGACCGGGAATCGTCCTGCTGGCGGGGCCAGTGA
CAGGAGACCGGAGGATTGTTCGAGCAGGTACCGCGGCTGTGTCTCTTTGC
GTCCGCCCTTGGCGTGCGTCTATTCCGCGCGTCTATTCCGTCTGTTCCCT
CTATTTTGAGTCGGCTGCAAGTCAGTTTGGTTTCGGTTTGCATAGGAGTT
GTCTGCCGGGGGTTGCCAGAAACGACCTTAACGCTGCGGTAACGAAGAGT
CCTGGAGGCCGCTCCAGACTCTCAGAGTGGGAAGTCGGATCCGATCTCGC
GAGATCCGGGAGGGTTCGACTTCATCTGGGGGTCAGTGGCCATAGACCAC
TACCAAGCTATTCTGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_m17.g1 MSMg01no108_m17.g1 CHROMAT_FILE:
MSMg01no108_m17.g1 PHD_FILE: MSMg01no108_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:46 2005
         (418 letters)



>mm_chr11_86014547_86015364
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggaaacagccaatcatcgtacgaggccaacgctgtaccgcccaatgggagcccgcga 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaaggaaacagccaatcatcgtacgaggccaacgctataccgcccaatgggagcccgcga 260

                                                                       
Query: 61  agtaaaatcaaccctcgagtacttggcgggaccggaagacgagcaccgcccctcccccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaaatcaaccctcgagtacttggcgggaccggaagacgagcaccgcccctcccccaa 320

                                                                       
Query: 121 accccaccccgcgaaaaagaccgggacaagttccgcacatttgcttgaaggaaaaaaaaa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccaccccgcgaaaaagactgggacaagttccgcacatttgcttgaaggaaaaaaaaa 380

                                                                       
Query: 181 aattcttgtactgtgagactttaagaagcacaaaatgggcgctagacgggtcttacattt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aattcttgtactgtgagactttaagaagcacaaaatgggcgttagacgggtcttacattt 440

                                                                       
Query: 241 ggtgcattgaccgggaatcgtcctgctggcggggccagtgacaggagaccggaggattgt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ggtgcattgaccgggaatcgtcctgctggcgggtccagtgacaggagaccggaggattgt 500

                                                                       
Query: 301 tcgagcaggtaccgcggctgtgtctctttgcgtccgcccttggcgtgcgtctattccgcg 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tcgagcaggtaccgcggctgtgtctctttgtgtccgcccttggcgtgcgtctattccgcg 560

                                                                     
Query: 361 cgtctattccgtctgttccctctattttgagtcggctgcaagtcagtttggtttcggt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtctattccgtctgttccctctattttgagtcggctgcaagtcagtttggtttcggt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)