BAC Information

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BAC

Clone NameMSMg01-109H01
Chromosome11 (Build37)
Map Location 26,893,923 - 26,894,173
singlet/doubletsinglet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109H01.T7 (MSMg01no109_h01.b1)MSMg01-109H01.TJ (MSMg01no109_h01.g1)
ACCAG322625AG322626
length764811
length of high quality
(start - end)
251 (70 - 320)208 (71 - 278)
definitionCHROMAT_FILE: MSMg01no109_h01.b1 PHD_FILE: MSMg01no109_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:40 2005CHROMAT_FILE: MSMg01no109_h01.g1 PHD_FILE: MSMg01no109_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCTTTCAAAATATCCTACAGGGTGTAACATCCCAAGGGACAGTGGCTAGA
CCCTGTACCTGTGGAAATTATCCTTTTCAGCATTGTACACACATACGCCC
ACTGTGTATTAGTCTACGGCTATGATACACATTATGAGCAGCACACATTT
TCTGTTCCATTCCTTTCTGAAGAGTGTGATTCTTTTCCTATAAAGGTCTC
TCAGCCCACTGTACCATCAGCTGATGTCTTAAACTGTGAAAATTGTTCGT
ACAAGCTCTATAGTGCTATATTGTTAGCCTCTCATGATGTTCTCTGAGGG
ATCTGGTATTCTTTTGCCAACTGATATTCACTGATGCATGATTGATATAT
TTATTTTAAAACTCCTTGAATTTGAGAATCTGCAATACCTGTTTGTTTAA
TTTATTATGCGATATATTAACTTTTACAATATTCTTTCTTTTTTATATGC
TATAATTTTTGTTTGTATTTTACTGCTTAACCTCCATTATGTCTTTTCTA
ATATGATTCCGCAAAGCATTATCGGTGTTATTTTTCATCCCTTATACTCT
ACATCTTCTATTCGAAACTCCCACTCCTCTACTCCTTTCCTTTATATTCT
GCCTTACTTCACTCATATATTACCTTGTTTCTCTCTCTCAACTTCTCTCT
CTACTCTCTCAATAATTCATATATCTTCCTCTCACTTTTTCTTCCTATTT
ATCGCTTTAATACT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGAAACATCAGGAATTCAAGGCCCATAG
TAAAAGCAATACACAGCAATCCAGCAGTCAACATCAAACTAAATGGATAG
AAACTTGAAACAATCCCACTAAAATCAGGCACTAGACAAGGTTGCCCATT
CTCTCCCTACCTATTCAATATAGTACTGAAAGTTCTAGCTAGAGCAATTA
GACAACATATGGAGGTCAGGAGGGATACTAATTGGAAAGGAAGAAATCAA
AATAACACTATTGGTAAATGATATGATAGTACACTTAAGTGACTCCAATT
ATTCCATCAGAGAACTCTTAACGCTGATACCTAAATAAAAAACTTCTGTC
TATTGGTTGGTACTCCCATTAATCTCTAATAAACTCATACAGCTCCCCTT
TATTGACATGCATATACCGTCTCGCGAACTTATTTTTTATTATATGGCTA
CCCTTTTTAACCATATCTATATCTTTTAAATTTTCTTGCGACATGTAGAT
AATACTTGTTTAATGATATATTTATGAACTAGCTATGTTACACCTTCTTC
TTTTTTTTATGTTTAACTTCTTACTAAACCTCTCCTGTCCAAAAGGAAAC
AATAATATCATAGTACTCCTATTCTCCTTTTATATATAAATATTAACAAT
ATTTATTTTTATTATTTTTTTTTTAAATTTAATTTACTCTTATATACTTT
CTTTACCACCCATATAACTACACCATTATTAGCTTATCAACATATTATGT
ATTATACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_h01.b1 MSMg01no109_h01.b1 CHROMAT_FILE:
MSMg01no109_h01.b1 PHD_FILE: MSMg01no109_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:40 2005
         (251 letters)



>mm_chr11_26893723_26894373
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgtaacatcccaagggacagtggctagaccctgtacctgtggaaattatccttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtgtaacatcccaagggacagtggctagaccctgtacctgtggaaattatccttttca 260

                                                                       
Query: 61  gcattgtacacacatacgcccactgtgtattagtctacggctatgatacacattatgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattgtacacacatacgcccactgtgtattagtctacggctatgatacacattatgagc 320

                                                                       
Query: 121 agcacacattttctgttccattcctttctgaagagtgtgattcttttcctataaaggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacacattttctgttccattcctttctgaagagtgtgattcttttcctataaaggtct 380

                                                                       
Query: 181 ctcagcccactgtaccatcagctgatgtcttaaactgtgaaaattgttcgtacaagctct 240
           |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct: 381 ctcagcccactgtaccatcagctggtgtcttaaattgtgaaaattgttcgtacaagttct 440

                      
Query: 241 atagtgctata 251
           |||||||||||
Sbjct: 441 atagtgctata 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)