ACAAANAAAGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACTCTTTCCCAAATGTAAATGGAAAAACAACACCC
TTTCCTTAATATCTCTTAATGTCAGTGGATAAATTCCCAAATAAAAAACA
TCGACTAACAGACTCACTATGTAAACATGACCCACCATTTTGCTCCAGGA
AACGCATTCCAGGCACATACACACACAAAACCTCCCACTAACTAGCCCGA
AAAATCATTTCCCATGTATATGCCATCATCACACTACTTGTAGCAACCAT
TCTAACATCCTACCTACCCGACTTTCACCCTTCATTCATAACATTCTTTA
TTTATCCCCGGTAAAACTTTTTTTTTCCCCCCCCCACCCCTAACAATCTA
CGACCAAACTCGCCCACAATACCCTTCCATTAAAAAAAAAAAACCCCCCC
CGTGGTGCTGTCGCCGTAACTTCTTACCCCATTACCCCCTTCTTACCCCT
TTAAACACTCTTTCCCTAGTACTTTTTTTTTTATAACCAAACCTCCCCTC
TACCCTTCTTTTCCATTACCCGTACCCCCCTTTTTCCCTTTCCCCCCCCC
CCCCCATTACCCCTTTCTCCCCCATTTCCCCCATCCATTCCCCCTCCCAT
ACCCCCCCGTTTCCTTTTCCCACCTTTCATTTTTCCCTCTCTTCTTCCAC
ATTACCCAACCCCCCTCTTTCTCCTTTATCCCCCCCCCTTTTCCATTTCC
C

TATACAANAAACGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTATATGAGTCAG
CAGCTCTGACAGCCTGTAATCTGATTTCATAAAATGATTAAAGAGTGAGG
AGCCTGGCAGTATCATTTCATTCTTGCTCTATTTGTGTAGCTTGGCGAAT
CTACGCAGACGAGAGCAATTTGCATACAGACAGTATTTATTGATGTGAAT
TTTATTAACTCCTATTTGCAAAACTAAAAAGTAATTTTCAGCAAATGGTC
AAAATCTAAAAGACATGGTTCCAGAGAATGCACAGAAAATTTGAACTGCC
ACTTTCAACTCTACTAATTCCTACTGAATAATATTTAATTTTAGGAAACA
TGTATGTTTCATGAGATAATAAATTTATGTGCAGTGGATACATCCATGGA
ACTATCTTATGAGCAAAATACTCCTGGTTTGTTATTTTCCATCTCCCCGT
TCAGCCATGTGGTTTTGCTTTACCGAACCTCCAGTCCACCTAATTCTATT
AATATCACTGGGTGCTCTCAAGCTATTTCCAGACTGATATCCTACATGGC
CACTATGAAATTCTCCAATGCCAATAGCTAGCTACAGATACCATCTTGTT
TTACCTCTTACTTCCAGATTAGCTCAGACATCACATCCTGAAACAGAGAA
AACATAAAGTATGGAACTGACAAGG

Query= MSMg01no109_n14.g1 MSMg01no109_n14.g1 CHROMAT_FILE:
MSMg01no109_n14.g1 PHD_FILE: MSMg01no109_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:13 2005
         (642 letters)



>mm_chr11_15644620_15645662
          Length = 1043

 Score = 1197 bits (619), Expect = 0.0
 Identities = 637/643 (99%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagttatatgagtcagcagctctgacagcctgtaatctgatttcataaaatgattaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagttatatgagtcagcagctctgacagcctgtaatctgatttcataaaatgattaaag 260

                                                                       
Query: 61  agtgaggagcctggcagtatcatttcattcttgctctatttgtgtagcttggcgaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaggagcctggcagtatcatttcattcttgctctatttgtgtagcttggcgaatcta 320

                                                                       
Query: 121 cgcagacgagagcaatttgcatacagacagtatttattgatgtgaattttattaactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcagacgagagcaatttgcatacagacagtatttattgatgtgaattttattaactcct 380

                                                                       
Query: 181 atttgcaaaactaaaaagtaattttcagcaaatggtcaaaatctaaaagacatggttcca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atttgcaaaactaaaaagtaattttcagcaaatggtcaaaatctaaaagacatggtccca 440

                                                                       
Query: 241 gagaatgcacagaaaatttgaactgccactttcaactctactaattcctactgaataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaatgcacagaaaatttgaactgccactttcaactctactaattcctactgaataata 500

                                                                       
Query: 301 tttaattttaggaaacatgtatgtttcatgagataataaatttatgtgcagtggatacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaattttaggaaacatgtatgtttcatgagataataaatttatgtgcagtggatacat 560

                                                                       
Query: 361 ccatggaactatcttatgagcaaaatactcctggtttgttattttccatctccccgttca 420
           |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 561 ccatggaactatcttacgagcaaaatactcctgttttgttattctccatctccccattca 620

                                                                       
Query: 421 gccatgtggttttgctttaccgaacctccagtccacctaattctattaatatcactgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccatgtggttttgctttaccgaacctccagtccacctaattctattaatatcactgggt 680

                                                                       
Query: 481 gctctcaagctatttccagactgatatcctacatggccactatgaaattct-ccaatgcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gctctcaagctatttccagactgatatcctacatggccactatgaaattctgccaatgcc 740

                                                                       
Query: 540 aatagctagctacagataccatcttgttttacctcttacttccagattagctcagacatc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatagctagctacagataccatcttgttttacctcttacttccagattagctcagacatc 800

                                                      
Query: 600 acatcctgaaacagagaaaacataaagtatggaactgacaagg 642
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acatcctgaaacagagaaaacataaagtatggaactgacaagg 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)