Query= MSMg01no110_k11.b1 MSMg01no110_k11.b1 CHROMAT_FILE:
MSMg01no110_k11.b1 PHD_FILE: MSMg01no110_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:18 2005
(607 letters)
>mm_chr11_36344445_36345453
Length = 1009
Score = 1158 bits (599), Expect = 0.0
Identities = 603/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 5 gaattccttccacctctcttcaggatgctgtacttcgtagagaggcattacttgctccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccacctctcttcaggatgctgtacttcgtagagaggcattacttgctccca 264
Query: 65 cactaggaatgctagaaacttcaccagggaccacacatcctcactgctagcccatgtttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactaggaatgctagaaacttcaccagggaccacacatcctcactgctagcccatgtttc 324
Query: 125 acaaggtttgtctttaagtcatatgcaaataagctaaatatggggtggagtctcaccatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaggtttgtctttaagtcatatgcaaataagctaaatatggggtggagtctcaccatg 384
Query: 185 gtgcagattaaagaagctggaattcagagaggttgaaacatcgctggtaaccacattatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgcagattaaagaagctggaattcagagaggttgaaacatcgctggtaaccacattatc 444
Query: 245 agatggttaaaaaggaaaaaaaaaaaaa--gatgactcaaactacagatgtagtttacat 302
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 agatggttaaaaaggaaaaaaaaaaaaaaagatgactcaaactacagatgtagtttacat 504
Query: 303 agtttcctaactggagcctgctcaatgatgcttgaaagttggcttatcttaaaatttgga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttcctaactggagcctgctcaatgatgcttgaaagttggcttatcttaaaatttgga 564
Query: 363 taaatcctgatccatacacccatatttttccattgtgcaatggatacaatagttcagaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatcctgatccatacacccatatttttccattgtgcaatggatacaatagttcagaca 624
Query: 423 ccaatcactacatgtcctgtccaggaaactacaaggctagccttgtttcgtattgcagct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaatcactacatgtcctgtccaggaaactacaaggctagccttgtttcgtattgcagct 684
Query: 483 ctgcaatatcaccaatgcttgtcctcattgtgatcatctggagagactcttcttagtgac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcaatatcaccaatgcttgtcctcattgtgatcatctggagagactcttcttagtgac 744
Query: 543 ttccatgtgcactgtcttgtgctgagggagagggcattgttgtggagatatagactgagc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttccatgtgcactgtcttgtgctgagggagagggcattgttgtggagatatagactgagc 804
Query: 603 catag 607
|||||
Sbjct: 805 catag 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1009
Length adjustment: 10
Effective length of query: 597
Effective length of database: 999
Effective search space: 596403
Effective search space used: 596403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k11.g1 MSMg01no110_k11.g1 CHROMAT_FILE:
MSMg01no110_k11.g1 PHD_FILE: MSMg01no110_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:18 2005
(642 letters)
>mm_chr11_36534816_36535857
Length = 1042
Score = 1226 bits (634), Expect = 0.0
Identities = 640/642 (99%)
Strand = Plus / Minus
Query: 1 ctcgagaaatgatagttatcagcagaaagccctgattaaagcattcagtctcactacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ctcgagaaatgatagttatcagcagaaagccctgattaaagcattcagtctcactacatc 783
Query: 61 gatcccttaccgtcaaaattgacttctgatccttgaaggaggtccctccacatcctgcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gatcccttaccgtcaaaattgacttctgatccttgaaggaggtccctccacatcctgcga 723
Query: 121 gctcacagcaatcttgggcctctccagagcctcaatcaggtgtggtccagagtgatacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gctcacagcaatcttgggcctctccagagcctcaatcaggtgtggtccagagtgatacag 663
Query: 181 cctcgctgtttacgaaattgacaaattcatagccctgtcgctggcttccttttcagtggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cctcgctgtttacgaaattgacaaattcatagccctgtcgctggcttccttttcagtggg 603
Query: 241 aagcggggcttctcttccagcaagccgacttagatgtctgtttactgttcccttcaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aagcggggcttctcttccagcaagccgacttagatgtctgtttactgttcccttcaaatg 543
Query: 301 tgagcgctgctggtgatgcacgtcgcaaatggaagtaatatcatttgaagtggtcccgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgagcgctgctggtgatgcacgtcgcaaatggaagtaatatcatttgaagtggtcccgct 483
Query: 361 agaagcccacgagcaatctaactgcattaactcctccgtcggagtggaggagactgaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agaagcccacgagcaatctaactgcattaactcctccgtcggagtggaggagactgaaga 423
Query: 421 gggtacacagctcgagcaagagggaaacagcaatatacaagtccatgactgtgagctgca 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gggtacacagctcgagcgagagggaaacagcaatatacaagtccatgactgtgagctgca 363
Query: 481 caggcacctaaagaggtttcacttactgccttcaaataaatgacaccagggcatcacagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caggcacctaaagaggtttcacttactgccttcaaataaatgacaccagggcatcacagg 303
Query: 541 acatctaatattctgtttacaaatcttgttaaacattcgaagcaactgagacactgtctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 302 acatctaatattctgtttacaaatcttgttaaacattcgaagcaactgagacagtgtctt 243
Query: 601 cctatatttctgaggggattatatacttctttttcccctttc 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cctatatttctgaggggattatatacttctttttcccctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
