CTTCTTTGTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATGTCCATTACCCCTTCCCCACCAACCAATACAAA
GTTCATATTTAAGAACTTCACATTAGAGTTGCCAAAAGATTTTTTTCATA
AAACACATATTTTTATAGGAAATTTACAGGTCTGTGATGGGATTCATGCA
CAGCTATCTTGAGCAGTGGGTTGGACATGTCTGCCAGAGGAAGGGCACTA
GAGTTCAAATGCATAACAACTCAAGTTTATACAAAGTAATAAGGAACATA
ACAAGTAAAAGGTGCAAAGGGAATACAGATGAAGAAACTTTCATGAAAGA
ATCTTGGAAAATGGGAATTCACATGACAAAAAATTTTTTTAAAAAAAATC
AACAGAGAAAAGCCTGCCTAGACATGCACATCTGTAACATCAGCACTAGG
GAATCAGAGGCAGGAGTGAGTATCAAAGCATGAGGCCAGGCAGCACTAAG
TAGCAAGATTCTGTCAAAACAAACAAGCCAACAAACAGAAAAAGAGACCT
GAGGAATACGTCCAAAGGCAGGAAAGAAAGGAATAAATATGCTTGGTAAG
TTTGGGCTCTTTTTTTTTTTAAGATTTTATTTATTTTCTATATAACATAT
ATGATGAGTACACTGTAGCTGTCTTCAGACACACCAAAAGAGGACATCAG
ATCCCATTACAGATGATTGAGATCCCCAATGTGTTTGATGGG

CTCCTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTCTCTTTTTTTTTCT
TTTCTTCTTTCCCTTCTTTTCTTTCTCTTTTTTTCCTTCTCCCCTCTTTC
TTCTCCCCGCCTTCTCCTCTTCACTTCTCTTCTTNNTTTTCGTTGCCTAC
GCTTGTCGCGCCTCGTCGGCTGTCGCCGCGGGGGAGTGTTGTTGCGCGGC
GGCNCCGCCCCTGGTCCCGCCGCGGCGTTTTTATCGTGACGGTGTGGTCT
GTCCGCGCGGTGTCCGCGCGCTGGACACTCACTTTTGCGGCCTCGGTTTT
TGTCCCGCTGCTCTGTCCCTGCCCCGTTCCGCCCGTTGTCGCTCCTTGGT
TGCCGCTGATCCGCCCCCGTTTTTCCCGCGCATTAGGTTATATATACGGA
ATGGACCGGGCGGGGGGGGTCGGGGGCGGGAACGCGGAGCGGCGATATGA
CATGGCGGCGGCGGTTAGAGTGGAAGTAGAGACGTCGGGATGCAGTAACG
CATTGGTGCGTGTATCGCACTGATTATTATCTACCCACACTAGCTATATC
CATCGTCCTTCTCCCGCGGCCCACCGCCGTTTATCGCCCCCCGCTCNTTG
GCTCGCGATCTTTTTTGCCGCCCCCGCCGCCCGCCCGGCGCCGTGGCGGC
GCGGCAGGATGTATATTCCGCGGGCACGTATGCGAAGTTATACAGAGGCC
ATCGCGGCTGTAGTGACGGCGCGTTTCGCTCCGGCGCCTCCGGTCAATGT
ACTCCACTCCCGCAGTCAGCTTATTACTTTCGCGCCGGCCCGCCCCCGGC
CGTCTCGCCGCTCTTTCTCCCCTATTCCCGTCCGCACTATCATTTACATC
CCATCCCCGCGCTCTATTTCCCGCC

Query= MSMg01no110_k18.b1 MSMg01no110_k18.b1 CHROMAT_FILE:
MSMg01no110_k18.b1 PHD_FILE: MSMg01no110_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:20 2005
         (623 letters)



>mm_chr11_84923592_84924614
          Length = 1023

 Score = 1135 bits (587), Expect = 0.0
 Identities = 613/625 (98%), Gaps = 9/625 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtccattaccccttcccc-accaaccaatacaaagttcatatttaagaactt 63
           |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatgtccaacaccccttccccaaccaaccaatacaaagttcatatttaagaactt 263

                                                                       
Query: 64  cacattagagttgccaaaagatttttttcataaaacacatatttttataggaaatttaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacattagagttgccaaaagatttttttcataaaacacatatttttataggaaatttaca 323

                                                                       
Query: 124 ggtctgtgatgggattcatgcacagctatcttgagcagtgggttggacatgtctgccaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtctgtgatgggattcatgcacagctatcttgagcagtgggttggacatgtctgccaga 383

                                                                       
Query: 184 ggaagggcactagagttcaaatgcataacaactcaagtttatacaaagtaataaggaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaagggcactagagttcaaatgcataacaactcaagtttatacaaagtaataaggaaca 443

                                                                       
Query: 244 taacaagtaaaaggtgcaaagggaatacagatgaagaaactttcatgaaagaatcttgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taacaagtaaaaggtgcaaagggaatacagatgaagaaactttcatgaaagaatcttgga 503

                                                                       
Query: 304 aaatgggaattcacatgacaaaaaa---tttttttaaaaaaaatcaacagagaaaagcct 360
           |||||||||||||||||||||||||   ||||||||||||   |||||||||||||||||
Sbjct: 504 aaatgggaattcacatgacaaaaaaatttttttttaaaaa---tcaacagagaaaagcct 560

                                                                       
Query: 361 gcctagacatgcacatctgtaacatcagcactagggaatcagaggcaggagtgagtatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctagacatgcacatctgtaacatcagcactagggaatcagaggcaggagtgagtatca 620

                                                                       
Query: 421 aagcatgaggccaggcagcactaagtagcaagattctgtcaaaacaaacaagccaacaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcatgaggccaggcagcactaagtagcaagattctgtcaaaacaaacaagccaacaaa 680

                                                                       
Query: 481 cagaaaaagagacctgaggaatacgtccaaaggcaggaaagaaaggaataaatatgcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaaaagagacctgaggaatacgtccaaaggcaggaaagaaaggaataaatatgcttg 740

                                                                       
Query: 541 gtaagtttgggctcttttttttttt--aagattttatttattttctatataacatatatg 598
           |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 741 gtaagtttgggctcttttttttttttaaagattttatttattttctatataatatatatg 800

                                    
Query: 599 atgagtacactgtagctgtcttcag 623
           |||||||||||||||||||||||||
Sbjct: 801 atgagtacactgtagctgtcttcag 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)